Brassica oleracea (wild cabbage): 106295638
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Entry
106295638 CDS
T04124
Name
(RefSeq) pre-mRNA-processing protein 40B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106295638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106295638
Spliceosome [BR:
boe03041
]
Complex A
U1 snRNP components
U1 related factors
106295638
Complex B
106295638
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
106295638
NCBI-ProteinID:
XP_013587049
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All DBs
Position
C5:34857323..34865977
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AA seq
993 aa
AA seq
DB search
MANNPHYPGIQPFQHPNASSINLPRGFAPSMNFQHRPPIQAPQSEQVAHLASQNFQYVGR
GGTTMNNGFPPQSYAPQLLQSMHHSLERPSQSNQVQHMPLGHPSLISQPNVSVASGTFLP
EPYVQTSDINMNGGPRALFSHQSATSFGHLRAPTQVTGPSSHSQAQQSAPISQDNAPSSI
MNPTFVHPKVASSQPIPFQEAATDWVEHTSADGRRYFFNKKTKQSTWEKPVELMTLFERA
DAKTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIARELAENASVQGLHAEGVVHASKV
LSRSDTASTAAPAGLPSQTSSTLPTSDTSEKLALTSDWEQAASVPGSSSPVENVDQVQAI
ADKTSELCDTAKTDNPSATVMITSAATLVDKETVSTENSGNADDVSAKNTNQGSGTGPEE
SQKHVVENERVDSQSEGKQIHQENFSYTNKSEAVDVFKSLLKSVNVGSDWTWEQAMREII
NDRRYGVLRTLGERKQAFNEFLAQMRKAAEEEKIARQLKRYEDFRRMLEECVELTPSTRW
SKAVTMLEDDERFKVVEREKDRRNIFEDHISDLKEKERLKAFEDRKRNIVEYRRFLESCN
FIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEERKKIQKEELKKAER
KHRDEFRGLIDEHIATGELTAKTSWRDYLVKVKDLPVYLAIASNSSGATPKELFEDAVED
LKRKYHELKSQIKDVLKLRKVTLSTGSTFDEFRVSVSEGIGSPSIPDFKLKLVFGDLLER
AKEKEEKEARKQTRNTEKLVDMLRSFKYITASSSWEDSKHLVEGTEKFRTIGDESFRKKT
FEDYVSHLKEQAKRIKQNKKEHVREEHDREKDKYGREKERVRERDSRDHRKQSSADNYNH
DVDELHGKERRRSGRDSHSRHRERHTSVKENEADHYKESHKAGRGHKESRQQRGLVLEAE
DEGREKRRRKGESEQTKRAEKEEELEDGECGRY
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggctaataacccccactatcctggcattcagccattccagcatccgaatgccagttcc
ataaatttaccccgaggctttgctccatccatgaattttcagcatcgtcctcccattcaa
gctccgcagtccgagcaagttgctcatttggcttctcaaaactttcaatatgttgggcga
ggcggcacaacgatgaacaacggatttccacctcaatcttatgcgcctcagttactacaa
tcaatgcaccattcgcttgaaagacctagccaatcaaatcaggtgcaacatatgccacta
ggacatccgtctctaatttcacagccaaatgtgtcagttgcctccggtaccttcttgccg
gagccttacgtacaaacttcagatattaatatgaatggtggccctagggcactcttttct
catcagagtgccacatctttcggacatctgagggcaccaactcaagtcactggaccaagc
agtcatagtcaggcacaacaaagtgcacctatcagccaggataatgcaccatcttctata
atgaatccaacatttgtacatccaaaggtagcttcttctcaacctataccttttcaagag
gctgcaacagattgggttgagcatacctcggcggatggacggagatattttttcaacaag
aagacgaagcagtccacttgggagaagcctgttgagttgatgactctatttgagagagca
gatgcaaaaactgactggaaagaacattcaagtcctgatggaagaaagtattattataat
aaggttaccaagcaatcaacatggacaatgcctgaggagatgaagattgctcgtgaacta
gcagaaaatgcatctgttcaagggctgcatgcagaaggcgttgttcatgcttctaaggtg
ctgtctcgttctgatacagcatcgactgcagctccggctggtttaccaagccaaacatca
tctacacttccaacatctgataccagtgagaaactagctcttacttctgattgggagcag
gcagcgtcagttcctggaagctcttccccggtcgaaaatgttgatcaagttcaggcaatt
gcagataaaacatcagaactgtgtgatactgcaaaaactgataatccttctgccactgtg
atgataacttctgctgctacattggttgacaaggaaacagtatcaaccgagaacagtgga
aatgcagatgacgtgtcagctaaaaacacaaatcaaggtagtgggactggaccagaggaa
agccaaaaacatgtggtggaaaatgaaagagttgacagtcagtcggaaggaaaacagatt
catcaagagaatttttcttataccaacaaatcggaagctgtggatgtcttcaaatcactt
ttgaaatctgtcaatgttggatctgactggacatgggagcaggccatgagagaaataatt
aatgatagaagatacggggttttgaggactcttggagagcggaagcaagccttcaatgag
tttctagctcaaatgagaaaagcagcagaggaggaaaagatagcaagacagctaaaacga
tatgaagattttagaaggatgttagaggaatgcgtggagcttactccttctactcggtgg
agcaaggctgtgactatgttggaagacgatgagcgtttcaaagttgttgaacgagaaaaa
gaccgtcgtaatatttttgaagatcatatcagtgacttaaaggagaaggagcggttgaaa
gcttttgaggatcgcaagcggaacattgttgaatacaggagatttttggaatcttgcaat
ttcattaagcctaatagccaatggcgcaaagttcaggaccgtttagaagtggatgaaaga
tgttcacgtcttgagaaaattgatcagctagaaatatttcaggagtatctgcgcgatctg
gagagagaagaagaggagagaaagaagatacagaaggaagaactaaaaaaagcagagcga
aagcatcgtgatgagttccgtggtctgatagatgaacatattgctacaggagagcttact
gccaaaactagttggcgtgattatttagtgaaggtcaaagatttaccagtatatttagca
attgcatcgaactcctctggcgctacaccaaaagagttatttgaagatgctgttgaggat
ttgaaaagaaagtaccacgagctcaaatctcagataaaggacgtattgaagctgagaaag
gtaacgttatccactggatcaacgtttgatgagttcagagtctcagtttctgagggtatc
ggttccccatctattcctgactttaaactgaagttagtgtttggtgatttgctggaaaga
gcaaaggagaaggaagagaaggaagccagaaaacagactcggaatactgaaaaattggtg
gatatgcttcgctccttcaagtatataactgcctcttcatcctgggaggattctaagcat
cttgttgaaggtactgaaaaattccgtaccataggggacgagagcttccggaagaagaca
ttcgaggattacgtttcgcacctgaaagagcaagcaaaaaggatcaaacagaacaagaag
gaacatgttagagaggaacatgacagggagaaggataaatacggaagagagaaggagaga
gtgagagaaagagacagtagagatcatcgtaagcaaagttcagctgataattacaaccat
gacgtggacgaactccatggaaaagaacgtagaagatcgggaagagatagccacagtaga
catcgagaaagacatactagtgtgaaggaaaatgaggcagaccattacaaagaatctcat
aaagctggtcgtggccataaggaatcaagacaacagcgaggtttggtgctggaagccgag
gatgaaggaagggaaaagcggcgtagaaaaggagagagtgagcaaacaaagcgtgcggaa
aaggaagaggagcttgaagatggagaatgtggtaggtactaa
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