Brassica oleracea (wild cabbage): 106295652
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Entry
106295652 CDS
T04124
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106295652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106295652
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106295652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
106295652
NCBI-ProteinID:
XP_013587070
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Position
C5:complement(43701574..43704483)
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AA seq
500 aa
AA seq
DB search
MQSDNGKLFIGGISWDTNEERLKEYFSTFGEVIEAVILKDRTTGRARGFGFVVFADPAVA
EFVITEKHHIDGRLVEAKKAVPRDDQNMVTRSNSSSIQGSPGPGARTRKIFVGGLPSSVT
ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDTEEAVDKVLLKTFHELNGKMVEV
KRAVPKEMSPGPARSPLGAGYSYGVNRVNNLLNGYAQGFNPGAVGGYGLRMDGRFSPVGA
GRSGFANFGSGYGMNMNFDQGLPTGFTGGNGNLDYGRGMSPYYIGNTNRFGPGPAVGCEG
GSGGGGGGGGNSSFFSSVTRNLWGNNGGLSYNNNNNNAANSNSNSNTYMGGGGSTSGNNN
TLSGGPFGNWGAPGGGGGGNNAVGNENAKFGYGGNGESGFGYAARSIGPSKAAPSSSFSS
ASAGYDGAGLAEFYGNGAVYSDPTWRSPTPEAEGPASFSYGIGGGGGGGGPSSDVSARSS
SPGYVGSYKRQPNRGEAPSR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccgacaatggaaagctgttcatcggagggatatcttgggacaccaatgaggaa
cgtctcaaggagtatttcagcacctttggtgaagtcatcgaagctgtgatcttgaaagat
cgcaccactggtcgtgcacgtggcttcggctttgttgtcttcgctgatccagctgttgct
gagtttgttattacagagaagcatcatatcgatggaagattggttgaagccaagaaggct
gttcctagagatgaccagaacatggtaactagaagcaacagcagcagcatccaaggatca
cctggtccaggagctcggacaaggaagatattcgtcggagggctaccttcctccgtcaca
gagagcgatttcaagacctactttgagcagttcgggacaacaacagacgtggttgttatg
tacgaccacaacacacaaaggcctagaggtttcggattcataacttacgacaccgaggag
gcggttgataaagtgctgctcaagacgttccatgagctcaacggtaaaatggttgaggtt
aagagggctgtgccgaaggagatgtctccaggtccagctcgtagccctcttggtgctggc
tacagctatggtgttaatagggttaataacctcttgaatggatatgctcaagggtttaat
ccgggtgcggttggtggctacgggcttaggatggatggccggtttagtccggttggtgct
gggagaagcgggtttgcgaatttcggttctggctatgggatgaatatgaactttgatcag
gggttgcccacagggttcactggaggtaatggaaacttagactatgggcgagggatgagt
ccttactacattgggaacacgaaccggtttggtcctggtcctgctgttggttgtgaagga
ggcagtggaggaggaggaggaggaggagggaactcgtccttcttcagttcggttacaagg
aacctatggggaaacaacggtggtcttagctataacaacaacaacaacaacgctgcaaac
tcaaactcaaactccaatacatacatgggaggaggaggatcaacaagtgggaacaacaac
acgcttagcggcgggccgtttggaaactggggtgctcctggaggtggaggtggaggaaac
aatgctgttggtaacgagaatgcgaagtttggttatggaggaaacggtgaatctggtttt
gggtatgcagcaaggagcatagggcctagcaaggcagcaccgtcgtcttccttctcttct
gcctcggcgggttatgatggagcaggacttgcagagttttacggaaatggtgcagtgtat
agtgatcccacttggagatcaccaactcctgaggcagaagggcctgcttcttttagctat
gggattggaggaggaggaggaggaggaggtccttcttctgatgtgtcagctagaagttca
tctccaggttatgttggcagttacaagagacaaccaaacagaggcgaggctccatcaagg
tga
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