Brassica oleracea (wild cabbage): 106295821
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Entry
106295821 CDS
T04124
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106295821
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106295821
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
PhoLip_ATPase_N
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
106295821
NCBI-ProteinID:
XP_013587266
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Position
C5:complement(3867028..3873142)
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AA seq
718 aa
AA seq
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MIQTHRSTIVCISRKLQDKSADFIMFKLSSHVYQLVATIGYRRHLLKQGGWIISLIMFLS
LFEIAISQNQSSDPESTQVLQLHYQDGHVVVDNGILQLTLSNPEGFVTGIRYNGIENVLA
YTGNEHDRGYWDLVWNFPGKKVKKSKGTLDRIEATKMEVITQSDEKIELSFSRTWNASST
TALPVNIDKRFVVLRNSSGFYSYAIFERLKGWPAVELDNIRLVFKLNQDKFHYMAISDER
QGNMPVPEDRIPPRGKPLAYPEAVQLLDPIEPEFKGEVDDKYEYSMESKDIKVHGWISTN
DSVGFWQITPSNEFRSAGPLKQFLGSHVGPTNLAVFHSTHYVGAELIMSFEEGEVWKKVF
GPVFIYLNSFPKGVDPLLLWTQAKNQTKIEEEKWPYNFTASSDYPSSDQRGSVTGRLLVR
DRYIRSEDIPANGSYVGLAAPGDVGSWQREYKGYQFWSKADEKGYFSINNVRTGRYNLYA
FVPGFIGDYHNQTVFDISPGTNISLGDLVYEPPRDGVTLWEIGVPDRTAAEFYIPDPNPT
FTNKLYLNRSDKYRQYGLWERYAELYPHEDMVYNVDVDDYSKNWFYMQVTRKQADGGYNG
TTWQIKFQLDDKMKNFTGNFKLRIALATSNVAELQVRVNDVSKDPPLFTTGEIGKDNTIA
RHGIHGLYWVYSVNVPAPSLRNGNNTIYLTQPLAISPFQGLMYDYIRLECPDSISHLT
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgatccagactcacagatcaactattgtctgcatttcgagaaagctccaagacaaatcc
gctgattttatcatgtttaagttgtcttcacatgtttaccagctcgtggcgaccataggt
taccggagacacttattgaaacagggaggatggatcatttctttgatcatgttcttgtct
ttgtttgaaattgcaatctcccaaaaccaaagttctgatccagaatcaacacaagtcttg
cagttacattaccaagatggacatgtggtggtggacaatggcattttacaattaactttg
tcaaatcctgagggatttgtaaccggaatacggtacaatggtatcgaaaatgtacttgcc
tacaccggcaatgaacatgatagaggttactgggacttagtgtggaactttccagggaaa
aaagttaagaagtccaaaggcacattagaccggattgaagcaacaaagatggaagtgata
acgcagagcgatgaaaagatagagctatcgttttcaaggacatggaatgcttcttcaacg
acggctcttcctgtgaatatagacaagaggtttgtagtgctgcgaaactcgtccgggttc
tacagttacgccatcttcgagaggctaaaagggtggcctgctgttgaactcgataatatt
cgattagtatttaagctaaaccaggacaagtttcattacatggcgatttcagatgagagg
caagggaacatgcctgtaccagaagatcggattcctcctcgaggtaaacctcttgcttac
cccgaggccgttcaacttctcgaccctatcgagcctgagtttaaaggagaggtggatgac
aagtatgaatactcaatggagagtaaagacataaaagttcatggatggataagcacaaat
gactcggttggtttctggcaaatcactccgagcaacgagttcaggtctgctggtcctctc
aaacagttcctaggctcccatgtcggtccaaccaacctcgcggttttccacagcactcac
tatgttggagcagaactaatcatgagttttgaagaaggtgaagtatggaagaaagtgttt
ggacctgtctttatttatttaaactcttttcctaaaggagttgatcctctcttgctttgg
actcaggccaagaaccagacaaagattgaagaagagaaatggccttataacttcacagcg
tcaagtgactacccttcatctgaccaaagaggatctgttaccggtcgattacttgtccga
gaccgatacataaggagtgaggatatacctgcgaatgggtcctacgttggtttggctgca
ccaggagatgttggctcatggcaaagagaatacaaaggttatcagttctggtcaaaggca
gacgagaaaggatacttttctatcaacaatgtgagaactggtcgttacaatctctatgca
tttgttcctggattcatcggtgattaccacaaccagacggttttcgacatctctccaggt
acgaatattagcctaggcgacttggtgtatgaacctccaagagacggtgtaactctatgg
gagatcggtgtaccagaccgaaccgctgcagagttctacattcctgaccctaacccgacg
tttactaacaaactatacctaaaccgttctgataaatacagacaatatggattatgggaa
cggtatgccgaactgtacccccatgaagatatggtttacaatgttgatgttgatgattac
tccaaaaactggttctacatgcaagttacaaggaagcaagctgatggaggatacaacggt
actacatggcagatcaagtttcaactcgacgataaaatgaaaaattttactggaaatttc
aaactgagaatcgctctagccacttcaaatgtagcagaactgcaggttcgtgtgaacgat
gtttctaaggatcctccattgtttactacaggggaaataggaaaagataatacgattgca
agacatggtatacatggactctattgggtatacagtgtgaatgttccagctccttctctt
cgcaatggaaacaacaccatatacctaacccaaccacttgccataagcccttttcaagga
ctcatgtatgactatattcgtctcgaatgtcctgattccatcagtcatctcacttag
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