Brassica oleracea (wild cabbage): 106295863
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Entry
106295863 CDS
T04124
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106295863
09123 Folding, sorting and degradation
03018 RNA degradation
106295863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106295863
03041 Spliceosome [BR:
boe03041
]
106295863
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106295863
mRNA degradation factors
5'-3' decay
Lsm complex
106295863
Spliceosome [BR:
boe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106295863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
106295863
NCBI-ProteinID:
XP_013587313
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Position
C1:complement(42356673..42358613)
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AA seq
137 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGREGPKGMGRGMDDGAARGRGRG
GSIGKMGGNKAGGRGRG
NT seq
414 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttcgctgctcaagactgctcaagggcatcccatgcttgtggagctgaag
aatggggagacgtataatgggcacttggtgaattgtgatacatggatgaacattcatctc
cgtgaagtcatctgtacttcaaaggatggagataggttttggcgaatgcctgaatgctat
atccgtggcaacactatcaagtacctccgagttcccgatgaggtgattgataaagtacag
gaagagaagacccgcacagatagaaaaccaccaggggttggacgagggagaggaagagaa
ggtccaaagggcatgggacgtggtatggacgatggagctgccagaggccgaggacgaggt
ggttcaattggaaagatgggtggaaacaaagctggaggtcgaggccgtggttga
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