KEGG   Brassica oleracea (wild cabbage): 106296016
Entry
106296016         CDS       T04124                                 
Name
(RefSeq) protein transport protein SEC13 homolog A
  KO
K14004  protein transport protein SEC13
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03013  Nucleocytoplasmic transport
boe04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    106296016
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    106296016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106296016
   04131 Membrane trafficking [BR:boe04131]
    106296016
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     106296016
Membrane trafficking [BR:boe04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    106296016
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    106296016
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    106296016
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WD40_Gbeta WDR55 Beta-prop_EIPR1 Beta-prop_Vps41 ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR3_2nd Beta-prop_IFT122_1st Beta-prop_IFT140_1st WDR90_beta-prop_4th EIF3I Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR41 NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_HPS5 WD40_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_SCAP
Other DBs
NCBI-GeneID: 106296016
NCBI-ProteinID: XP_013587511
UniProt: A0A0D3CNE9
LinkDB
Position
C5:46753600..46755240
AA seq 302 aa
MPPQKIETGHSDIVHDVVMDYYGKRIATASSDGTIKITGVSNSGGSQQLATLTGHRGPVW
QVAWAHPKYDSLLASCSYDGQIIIWKEGNQNEWTQSHVFTDHKVSVNSIAWAPHELGLSL
ACGASDGNISVFSARADGGWDTTRIDQAHPVGVTSVSWAPATEPGALVSSGMHEPVYKLA
SGGCDSTVKVWKFANGSWKMDCFPALHKHKDWVRDVAWAPNLGLPKSTIASGSEDGSVII
WTVGKEGEQWEGKVLKDFKTPVWRVTWSLTGNLLAVSDGNNNVTVWKEAVDGEWEQVTVV
EP
NT seq 909 nt   +upstreamnt  +downstreamnt
atgcctccgcagaagatcgagacgggtcacagcgacattgtccacgatgtcgtcatggat
tactatggaaagcgaatagcaactgcctcatcagacggcaccatcaagataaccggagtg
agcaacagcggcggatctcagcagctagctaccttaaccggccaccgaggtcccgtctgg
caagtcgcctgggcccacccgaagtacgattcgctcctcgcttcgtgctcatacgatggg
caaatcataatatggaaagaaggaaaccaaaacgagtggacgcagtctcacgtcttcaca
gaccacaaagtatcagtcaactccatcgcctgggctcctcacgagctcggtctctcctta
gcttgcggagcatccgacggaaacatttctgttttctcggccagagccgatggaggttgg
gacacgacgaggatagaccaagctcacccggtcggagtcacttcggtgtcgtgggcacca
gcgacggagccaggggcgctcgttagctccggtatgcacgaaccggtctacaagttagcg
tcgggagggtgtgatagtacggtgaaggtgtggaaattcgcaaacgggtcgtggaagatg
gactgtttccctgcgcttcacaagcacaaggactgggtgcgtgacgtggcgtgggcaccg
aacttgggtctgccgaagtcgacgatagcgagcgggtcggaagatgggagtgtgatcata
tggacggtggggaaagaaggagagcagtgggaagggaaggtattgaaagatttcaagacg
ccggtgtggagggtgacgtggtcgttgacgggtaacttgctggcggtgtcggatgggaac
aataacgtaacggtgtggaaagaggctgtggatggagagtgggagcaagtgaccgtcgtt
gagccttag

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