Brassica oleracea (wild cabbage): 106296039
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Entry
106296039 CDS
T04124
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106296039
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106296039
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106296039
NCBI-ProteinID:
XP_013587535
UniProt:
A0A0D3C7L2
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Position
C5:complement(1439118..1443100)
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AA seq
431 aa
AA seq
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MAVLPTWILAMMCLLFFVGAMENSTHDKISSLSRSNENEWNAHAVTNPDEVADEVIALAE
MSVRNHTERRKLGYFTCGTGNPIDDCWRCDANWHKNRKRLADCGIGFGRNAIGGRDGRFY
VVTDPNDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH
IANGGCITIQYVTNVIVHGLHIHDCRPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVW
IDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKAMQVTIAYNHF
GVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYAAPKNPFAKEVTKR
VDTPASHWKGWNWRTEGDLLQNGAYFTASGAASSGSYARASSLAAKSSSLVATITNDAGA
LPCRRGRQCTS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcttccgacatggattttagctatgatgtgtcttctcttcttcgtcggagca
atggagaacagtacacacgacaagatatcatctctctccagatcgaacgaaaatgaatgg
aacgcgcatgcagtgacaaatccagatgaagtagcggacgaagttatcgccttggctgaa
atgagtgtaagaaaccataccgagaggaggaagctaggttactttacttgcggaacaggc
aacccgatcgacgactgttggagatgcgatgccaactggcacaagaaccgcaaacgccta
gcggactgtggaatcggattcggaagaaacgcgatcggtggacgagacgggcgtttctac
gtagtcaccgacccaaatgacgacaacccggttaaccctagaccgggaacactacgtcac
gccgtgatccaagaccgaccgctatggatcgttttcaaacgcgacatggtgattcagcta
aaacaagagctgatcgtcaacagcttcaaaacgatcgacggacgcggcgcaaacgttcac
atcgctaacggcggttgcatcacgattcagtacgtgacgaacgtcatcgtgcatgggttg
catattcatgactgtagaccgacgggtaacgctatggtgagaagctcagagacgcacttt
gggtggaggacgatggcggatggtgacgcgatttcgatctttggatcgagtcatgtttgg
attgatcacaactcgttgtctcattgcgctgatgggcttgtggatgctgtcatgggctcg
acggcgattaccatctctaacaaccatatgactcatcacaacgaggttatgttgctcgga
catagtgattcctacacgagggataaagccatgcaagttactattgcttataaccatttt
ggtgtcggacttattcaaagaatgccgaggtgccgacacgggtatttccatgtcgtgaac
aatgactacactcactgggaaatgtacgcgattggtggaagcgcagacccgacaatcaac
agtcaaggaaaccgctacgccgccccgaagaatccctttgctaaagaggtgactaagaga
gtggacacaccggctagtcattggaaaggatggaactggagaacggaaggagatttgctt
cagaacggagcttacttcactgcttctggagccgcttcatctggtagctacgcacgtgcc
tctagcctcgcagctaaatcttcttcattggttgcaaccattactaacgacgctggagct
ctaccttgtcgtagaggacgtcagtgtacctcatag
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