Brassica oleracea (wild cabbage): 106296068
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Entry
106296068 CDS
T04124
Name
(RefSeq) cell differentiation protein RCD1 homolog
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106296068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106296068
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106296068
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
106296068
NCBI-ProteinID:
XP_013587572
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Position
C5:33647297..33649588
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AA seq
312 aa
AA seq
DB search
MANLPPSLSMGTPFGGPSTSVGAPANKDRNLASAEQLVLDLSNPELRENALLELSKKREL
FQDLAPLLWNSFGTIAALLQEIVSIYSVLAPPNLTPAQSNRVCNSLALLQCVASHSDTRM
LFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCL
RTMEMGSELSKTVATFIVQKILLDDVGMDYICTTAERFFAVGRVLGNMVQSLVEQPSPRL
LKHIIRCYLRLSDNPRACAALGSCLPDSLRDGTFSNCLREDQIARRWLQQLVHNVGVGRV
PSHQGGGFEHML
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatctacctccatctctctccatgggcacacctttcggcggtcccagcacgtcg
gtcggagctccggcgaacaaagatcgaaacttggcctccgcggagcagttggttctcgat
ctcagcaatcctgaactcagagagaatgctctcctcgagctttccaagaaaagagaactg
tttcaggatttggcgcctctcttgtggaactcttttggtaccattgctgccttgttgcag
gagatagtgtcaatctactctgttcttgctcctcctaatctgactcctgctcagtccaac
cgtgtctgcaactcactcgcccttcttcagtgcgtagcctctcattccgacacaaggatg
ttatttttgaaggctcacattccgttgtacctttaccccttcctgaacacaacgagtaag
tcaagacctttcgagtacttgcgccttactagcttaggtgtcattggtgctcttgttaag
gttgatgatacagaggtcattagcttccttctatcaaccgaaattattcctctgtgcctc
cgcaccatggagatggggagcgagctgtcgaaaactgttgccacattcatagttcagaag
atcttgttggatgatgtggggatggattacatctgcacaacagcagagcgttttttcgct
gttggtcgagtgttgggaaacatggttcagtcacttgttgagcagccttctccacgtctt
ttgaagcatatcatccgttgttacctccgtttatcagacaaccctagggcgtgtgctgca
ctcggaagctgtctccctgactcgctgcgagatggaaccttcagcaattgtcttcgcgag
gatcaaatcgcgaggaggtggctgcaacagctggttcacaatgttggagttggtcgagtc
ccatcacatcaaggtggaggatttgagcacatgctttga
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