Brassica oleracea (wild cabbage): 106296196
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Entry
106296196 CDS
T04124
Name
(RefSeq) putative ATP-dependent RNA helicase DHX33
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106296196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106296196
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106296196
Spliceosome [BR:
boe03041
]
Complex C
Other components
Step II factors
106296196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
AAA_22
DEAD
nSTAND3
AAA_19
HA2_N
PhoH
AAA_16
ABC_tran
T2SSE
FtsK_SpoIIIE
TsaE
NB-ARC
AAA_23
AAA_30
AAA_24
Motif
Other DBs
NCBI-GeneID:
106296196
NCBI-ProteinID:
XP_013587731
UniProt:
A0A0D3CD35
LinkDB
All DBs
Position
C5:14045375..14048774
Genome browser
AA seq
721 aa
AA seq
DB search
MPSMAQGELKSSVLNSKSPIASRFRMRQKIAEHRKSLPIASVEKRLIEEVQKNDILIIVG
ETGSGKTTQLPQFLFSAGFCREWKMVGITQPRRIAAVTIAKRVAEESDVELGQRVGYSIR
FDDCTSSSTRLKYMTDGFLLREALLDPLLSRYSVIVVDEAHERTVHTDVLLALLKEVQRA
RSKQEGVQTKAGDEIGVKRNGGVLRGCQGRKVSPLKLIIMSASLDARVFSEYFGGAKAVH
VEGRQFPVDIFYTVHPETDYVDAALVTIFQIHVEEKPGDILVFLTGQDEIESVERLVKER
LEHLPEDKRKLLPLAIFSALPSEQQMQVFAPAPTGFRKVILATNIAETSITIPGIRYVID
PGFVKARTYDPSKGMETLDVVPASKAQSLQRSGRAGREGPGKCFRLYPEREFEKLEESTK
PEIKRCNLSNVILQLKALGIDDIVGFDFIDKPSRGAIVKALTELRLLGALTDDCKLEKPA
GEQMSQLPLDPVYSRALILANNQFNCLEEMLITVAMLSVESIFYDPREKREEARTSRNHF
ASVEGDHLTYLSVYRESNEFLEKRKTESSEAKIDKIMKKWCKDNFVNNRSLKHARDTYRQ
IREHVEQMGFNVSSCGNDMLEYRRCLAASFFLKAAQRQMDGTYRALESGEIVHIHPTSVL
FRSKPECVIFNELMQTSKKYIKNLTRIDHLWLAELAPHHYKTDDEMNDFNTRDGMLQTEA
F
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaatggcgcaaggagaactcaagagctctgtactaaacagtaaatccccaatt
gcttcacgcttcagaatgaggcagaagatagcagaacatagaaagtctcttcctattgct
tcagtggagaagcgtttgattgaggaggttcaaaagaatgatattttgattattgttggt
gaaaccggtagtgggaagactactcagctgcctcagtttctattcagcgctggattctgt
agggaatggaagatggtggggataacgcagccgaggcgtatcgctgctgtgactattgcc
aaaagggtagctgaggagagtgatgttgagttgggccaaagggttggttattccattagg
tttgatgattgcacttctagctccacgaggttgaagtacatgactgatgggtttttgttg
agggaagctttgttggatccgcttctttctagatattcagtcattgttgtcgatgaagcc
catgagaggactgttcatactgatgttctgcttgcattgctgaaagaggtgcagcgggct
cggtcaaagcaggaaggagtacaaacaaaagcaggtgatgagattggtgtgaagcggaat
ggtggtgtgttaagagggtgccaaggcaggaaagtatctccgttgaagctgataatcatg
tctgctagtttggatgcacgtgttttctctgagtactttggtggtgccaaagctgttcat
gtggaagggagacagtttcccgttgacattttttacacagtccatcccgaaacagattat
gtggacgcagctttggtcactatattccagattcatgtggaagagaagccaggtgatata
cttgttttcctcaccgggcaagatgagattgaatctgttgaaagacttgtcaaagaaaga
cttgagcatttacctgaagacaagaggaagctgctgccacttgctatcttctctgctctt
ccatcagagcagcaaatgcaagtttttgcccctgcgccaactggttttcgtaaggtgatt
ttggccacaaacatagcggaaacatcgattacaattcctggaataagatatgtgatagac
cctgggtttgtcaaggcacgaacctatgatccaagcaaaggtatggagacgcttgatgtt
gttccagcatcaaaagcacagtcgcttcaaagaagtggacgtgcaggacgtgagggtcct
ggcaaatgttttcgtctttatcccgaaagggaatttgagaagctggaggagtcaaccaaa
ccagagatcaagagatgcaatctctctaatgtcattttgcagctcaaggctctgggaatt
gatgacattgttggatttgactttatagataaaccttctaggggagccatagtgaaggca
ttgacggagttgcgcttgcttggtgccttgacggatgattgcaaactagagaaacccgcc
ggagaacaaatgtcacagctcccactagatcctgtctactccagagctctaattttggcc
aataatcagttcaactgtctcgaggaaatgttaatcacggttgcaatgctctctgtggaa
tccatattttatgatcctcgtgagaagagagaagaggcaagaacctcaagaaaccacttt
gctagcgttgaaggggatcatctcacttatcttagcgtataccgagagtcaaatgagttc
ttggagaagagaaagacagaaagcagtgaagccaaaattgataaaatcatgaaaaaatgg
tgcaaggacaacttcgtgaataatcgttccttgaaacatgcccgtgacacttacagacaa
attcgtgaacatgttgaacagatgggttttaatgtgtcttcgtgtgggaacgacatgctc
gagtatcgtagatgtcttgctgcatcgtttttccttaaagcagcacagagacagatggat
gggacatacagggcgttggaaagtggggagattgtccacatccacccaacttctgtttta
ttccgttcgaaacccgagtgcgttatcttcaacgagctcatgcaaaccagcaagaagtac
attaagaacctgacgagaattgatcatttatggttggctgagttggctcctcatcattac
aaaacagatgatgagatgaatgactttaacacaagagatggaatgttgcagactgaagct
ttctaa
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