Brassica oleracea (wild cabbage): 106296562
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Entry
106296562 CDS
T04124
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
boe03016
]
106296562
Enzymes [BR:
boe01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
106296562
Transfer RNA biogenesis [BR:
boe03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
106296562
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
106296562
NCBI-ProteinID:
XP_013588174
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Position
C6:35971006..35974221
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AA seq
599 aa
AA seq
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MEDIEDMFAGGAGGAPPGFRLPLNAVGVNPKRNTSKRSISKQKDEVTDSNRDSLAPPSMK
IPGTQTIYIKTFGCSHNQSDSEYMAGQLTAFGYGLTEVPEEADLWLINTCTVKSPSQSAM
STLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRLL
NRKTLPSLDLPKVRRNNFIEILPVNVGCLGACTYCKTKHARGHLGSYTVESLVERVRTVI
SEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFMLEHLKE
IAAVLRHPCVYTFLHVPVQSGSDAVLTAMNREYTSGEFRTVVDTLTELVPGMQIATDIIC
GFPGETDEDFSQTVGLIKDYKFAQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTCVF
EAFAPYTGMEGKEERIWITEIATDGVHLVGHTKGYIQVLVSGPESMLGTSAIARITSVGR
WSVFGEVIETLASTNVVTQVREETKPACTSDVSTCETCACFAESCCGEGKSGEACNISGD
ITGQDHKTGEKSMTKEEEKQEVVSHWGLVDKALVCGVFVSSLTILVLIISIASRVLLRQ
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggaggatatcgaggatatgttcgccggaggagctggcggtgcaccgccggggttccga
ttaccgttaaacgccgtcggagttaatccgaagaggaatacgagtaaacgtagcatctcg
aagcagaaggatgaagttactgattcgaatcgcgattcgcttgctccgccatcgatgaag
atcccaggaactcagacgatttacatcaagacgtttggttgttcacataatcagagtgat
agtgagtatatggctgggcagcttacggcatttggctacgggttaacagaagtaccagag
gaggctgatctgtggctcattaacacttgtactgtgaagtccccgagccagtctgcgatg
tctactctgataacaaggggtagaagtgggaaaaagcctcttgtgatagccggatgtgtt
cctcagggaagccgtgaccttaaagaactcgaaggcgttagtgtggttggagtgcaacag
attgatcgtgttgttgagattgttgaagagactcttaagggtcatgaagtgaggctgctg
aatcggaagactttgccttcgcttgatctcccaaaggtgcggaggaacaattttatcgaa
atccttcccgtcaacgttggctgtttgggtgcctgtacttactgcaagaccaagcatgcc
cgtggtcacttaggaagctacacagtcgagagccttgtggagcgggtgagaactgtaatc
tctgaaggagtcaaggaaatttggttgagcagcgaggacactggagcctatggtcgtgac
ataggagttaatcttccaattctgcttaatgccattgttaaggagcttccttctgatcaa
agcacaatgctaaggattgggatgactaatcctccctttatgctcgagcatttgaaagaa
atagcagctgttttacgtcacccatgtgtctacacatttcttcacgtccctgtgcaatct
ggcagtgatgctgtgttgacggccatgaacagggaatatacatcgggtgagttcaggacc
gtggtagacaccttaacagaacttgtgccggggatgcaaattgctactgacataatatgc
ggattccctggggaaaccgatgaagacttttctcaaactgttgggcttatcaaggattat
aagtttgctcaagttcatatatctcagttttaccccagaccagggaccccagcagcaaag
atgaagaaggtacaaagtaagatagtaaagcaacgaagccgtgagctaacttgtgtcttt
gaggcttttgcaccttacaccggaatggagggcaaagaagagagaatatggataaccgaa
atagctaccgacggtgtccacttggttgggcataccaaaggatacattcaggtcttagtt
agtggaccagaaagtatgcttgggacttcagcgatagcgaggataacatcagtagggaga
tggtcagtgttcggggaggtgattgagacactagcctctacaaatgtagtaacacaagtc
cgagaggagacaaagccggcatgtacctctgatgtcagtacttgtgagacttgcgcatgc
tttgctgagagctgttgtggagaagggaaatcaggagaggcctgtaacatttctggagat
atcacaggacaggatcacaaaacaggagaaaagtcaatgacaaaagaggaagagaagcaa
gaagtggtatcgcattggggtttggttgacaaggcacttgtgtgtggagtgttcgtaagc
tcgctcacaattcttgttttgattattagcatcgcatctagagttttgctgcgtcaatga
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