KEGG   Brassica oleracea (wild cabbage): 106296777
Entry
106296777         CDS       T04124                                 
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
boe  Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:boe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:boe03041]
    106296777
Spliceosome [BR:boe03041]
 Complex B
  Other components
   Complex B specific factors
    106296777
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd LisH_TPL ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_NWD2_C Ge1_WD40 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 Beta-prop_NUP159_NUP214 WD40_RFWD3 DUF7165 Beta-prop_LRRK2 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_VPS8 VPS8_N Beta-prop_NOL10_N Beta-prop_HPS5 Beta-prop_IP5PC_F WD_LRWD1 zf_topless Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 106296777
NCBI-ProteinID: XP_013588461
UniProt: A0A0D3D0F7
LinkDB
Position
C6:36724114..36728386
AA seq 512 aa
MALEIEARDVIKIVLQFCKENSLNQTFQTLQSECQVSLNTVDSVETFVSDINSGRWDSVL
PQVSQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQVMGVMKQEEPERYLRMEHL
LVRSYFDPHEAYGDSTKERKRAQIAQAVAAEVTVVPPSRLMALVGQALKWQQHQGLLPPG
TQFDLFRGTAAMKQDVEDTYPTTLNHTIKFGTKSHAECARFSPDGQFLVSSSVDGFIEVW
DYISGKLKKDLQYQAEETFMMHDEAVLCIDFSKDSEMLASGSQDGKIKVWRIRTGLCFRR
LERAHSEGVTSLTFSRDGTQLLSTSFDHTARIHGLKSGKLLKEFRGHTSYVNNAIFTSDG
TRVITASSDCTVKVWDSKTTDCLQTFKPPPSLRGSEASVNSVHLFPKNTEHIVVCNKTSS
IYIMTLQGQVVKSFSSGKREGGDFVAACVSTKGDWIYCLGEDKKLYCFSYQTGGLEHFMM
VHEKDVIGLSHHPHRNLIATYSADCTMKLWKA
NT seq 1539 nt   +upstreamnt  +downstreamnt
atggcgctcgaaatcgaagctcgagatgtaataaagattgtgcttcagttctgcaaagag
aactccttgaatcagacgttccagacactacagagcgagtgtcaggtttctctaaacaca
gtagacagcgtcgagacgtttgtttctgatattaatagtgggaggtgggactctgtactt
cctcaagtgtctcagcttaagcttcccaggaataaacttgaagacctttatgaacagatt
gtgttggagatgatagaacttcgagagttggacactgcccgagctattttgaggcaaact
caggtgatgggtgtcatgaagcaggaggaaccagaaagatatttgcggatggagcatctt
cttgtcagaagctactttgatccgcatgaggcttatggagactcaactaaagaaagaaag
cgtgcacagattgctcaagctgtggctgccgaggttactgtggtacccccttcacggtta
atggctttggtaggccaggctttaaagtggcaacagcatcaaggactactccctccagga
actcagtttgacctcttccgtggaacggcagctatgaaacaagatgtggaagacacatat
cctactactcttaatcatacaataaagtttggtacaaagagtcatgccgaatgtgctagg
ttctcaccagatggacagtttcttgtatcgtcttctgttgatggttttatcgaggtatgg
gattacataagtgggaagctgaagaaggatttgcaatatcaagctgaagaaactttcatg
atgcatgacgaggctgtcctttgtatagactttagcaaagattcagagatgcttgcatct
ggctcacaagatggaaagattaaggtttggcgtattaggactggtctatgcttccgtcgt
cttgagcgtgcacattccgaaggagttacaagtctaacattctctcgggatggaactcaa
ttgctaagtacctcctttgaccacactgcaagaatccatggtttgaaatctgggaaattg
ttgaaagagttccggggtcatacatcttatgtaaacaatgccatctttacaagtgatgga
acccgtgttatcactgcctccagtgactgcacagtgaaggtctgggattcaaagacgaca
gattgtctacaaacattcaagccgccaccctcactaagaggaagtgaagcttcagtcaat
tctgttcatttgttccctaaaaacacagaacacattgttgtgtgcaacaagacatcatct
atatacatcatgacactccaaggacaggttgtgaagagtttctcatccggtaagagggaa
ggaggagattttgtagcagcatgtgtatctacaaaaggagattggatatactgccttggt
gaagacaagaaactgtactgcttcagctatcaaaccggtggacttgagcattttatgatg
gtgcatgagaaagatgtgataggcttatcacaccacccacatagaaacctcatcgctacc
tatagtgcagattgcaccatgaagttgtggaaagcctga

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