Brassica oleracea (wild cabbage): 106296934
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Entry
106296934 CDS
T04124
Name
(RefSeq) DNA ligase 1 isoform X1
Organism
boe
Brassica oleracea (wild cabbage)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DRMBL
DNA_ligase_A_C
RMMBL
Motif
Other DBs
NCBI-GeneID:
106296934
NCBI-ProteinID:
XP_013588650
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Position
C6:32134360..32141286
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AA seq
1390 aa
AA seq
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MGSDSAGDFPNDGDAETLNLNSTELYSSAVSSSVPTPSPKPPFSPLSIPQSNRIPKTNFT
VDFFRSSPSADPSSVAFFLSHFHSDHYAGLSSSWSRGIIFSSHITARLLKQILQVPSQLV
FPLPMNQKVIIDGSEVVLIDVNHCPGAVQFLFKTNDGLERYIHTGDFRFCDSMRSDPFLS
SFVGCEGVFLDTTYCNPKFVFPTQQESVDYVINVIDKIDRESKENEKKVLFLVATYVVGK
EKILIEIAKRCKRKIFVDARKMSILNVLECGESGMFTEDKSESDVHVVGWNVLGETWPYF
RPNFAKMNEVMVERGYDKVVGFVPTGWTYEVKRNKFAVKVKDSMEIHLVPYSEHSNYDEL
REYIKLLRPKRVIPTVGVDVEKMDSREVCKMQKHFSGLVDEMANKKEFLLGFYRQSDKKS
EKDDMDISEENDAPRSDSLVTERLLIELRDSLPDWVSEEQMLDLIKKHAGNPVDIVSNFY
ECEAEFYKQSSISTSSLENHAVLVDDDGTDSQPISAKSTSSDCQASPKGFALPRKVGLTK
GVVSPGKRSKSISNKSNKKAKKDPKSRPVGPGQSTITKFFDKVLDSGSNSVAAGLETDEC
NTDEKMVHSDAKEATDQFIDIVHGSESLREYAASIIDEAKGDINRALDIYYSKPSEIPGE
HAGEGGGGLSSKSNQFPQCPEACSSQENKKTSQKSGLALNLCEQTSAEEMVDNDYVSLPP
EKYKPKEHACWRNGQPAPYIHLVRTFASVEGEKGKIKAMSMLCNMFRSVLALSPDDVLPS
VYLCTNKIAADHENIELNIGGSLISAALEEACGISRSTMREMYNRLGDLGKDKSNALTVN
VWLCRLLSKFPGDVAQLCRQTQKLLVPPPPLLVRDVFSTLRKISVQSGTGSTRQKKNLIV
KLMRSCREKEIKFLVRTLARNLRIGAMLRTVLPALGRAIVMNSFWNCHNKEPSENCFKEK
LEGVSAAVVEAYNILPSLDVVVPSLMEKDIEFSTSTLSMIPGIPIKPMLAKIANGVQDFI
KLFQDKAFTCEYKYDGQRAQIHLLLDGTVRIFSRNGDETTSKFPDLVDVIKQFACPTAET
FMLDAEVVATDRKNGNKLMSFQELSTRERGSKDALVTTKSIKVEVCVFVFDIMFFNGEQL
LTLPLRDRRRRLKEVFPETRPGFLEYATEITVGSEEASLNNQDTLCRINAFLEDAFQSSC
EGIMVKSLDVDAGYCPTKRSDSWLKVKRDYVDGLGDTLDLVPIGAWHGNGRKAGWYSPFL
MACYNPETEEFQSVCRVMSGFSDAFYIEMKEFYSEDKILAKKPPYYRTGETPDMWFPAEV
VWEIRGADLTVSPVHSAALGLVHPSRGISVRFPRFICKRADRDPEECSTAADIAEMFHAQ
TRKMNIKSQH
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggggtccgactccgccggcgacttcccaaacgacggcgacgcagaaaccctaaacctc
aactctacagaactctactcatcagcagtttcctcctccgttcctacaccctccccgaaa
ccaccgttctctcctctctcaatccctcaatcaaacagaatccccaaaaccaacttcacc
gtcgacttcttccgctcctccccctccgccgatccctcctccgtcgctttcttcctctca
cacttccactccgaccactacgccggcctctcctcttcctggtccagaggaatcatcttc
tcctctcacataaccgcacgccttctcaaacaaatcctccaagtcccgtcacaactcgtc
ttccctctacctatgaatcaaaaagttatcatcgatggctccgaggttgttcttatcgac
gtgaatcactgcccaggagctgtacagttcctcttcaaaaccaacgacggtctcgaacgg
tacattcacaccggagacttcagattttgcgattcgatgagatcagatccgtttctaagt
agcttcgttggctgcgaaggtgtttttctcgacactacttattgcaacccgaagttcgtt
ttccccacgcagcaagagtctgttgattatgtgattaacgtgatagataagatcgataga
gagtctaaggaaaatgagaaaaaagttttgtttcttgttgctacttatgttgttggcaaa
gagaagattttaattgagattgctaagagatgcaagaggaagatcttcgtggacgcgagg
aagatgtcgattttgaacgtcttggagtgtggagagagtggaatgttcactgaggataag
agcgagagcgatgttcacgttgtgggatggaatgtgttgggcgagacttggccttatttt
cggccgaatttcgccaagatgaatgaggttatggttgagagagggtatgataaggttgta
ggttttgtgcctacagggtggacgtatgaagtgaagaggaataagtttgctgtgaaggtt
aaggattctatggagattcatcttgtgccgtatagtgagcattcgaattatgatgagctt
agggagtacataaagttgttgaggcctaaaagagttattcccacggttggtgttgacgtc
gagaagatggacagcagggaggtttgtaaaatgcagaagcatttttctggacttgttgat
gagatggcgaacaagaaagagtttttattgggtttctatcgccagtctgacaagaagagt
gagaaagatgacatggatattagcgaagaaaatgatgctccaagaagtgattctttggtg
actgaaagattgctgattgaactacgtgattctttgcctgattgggtcagtgaagagcag
atgttagatctgattaagaaacatgctggtaaccctgttgatatagtgagtaacttctat
gaatgcgaagcagagttttacaagcaatcctcgatttccacatcttccttggagaatcat
gctgttctggttgatgacgatggaaccgactcgcagccgatttctgctaagagcacttcg
tcagattgtcaagcaagtccaaaagggtttgcattaccaagaaaagttggtttaacaaag
ggtgttgtttctcccgggaaaagaagcaaaagcattagcaataagtcaaacaagaaggcc
aagaaagatccaaagtcgagaccagttggtccagggcagtcaaccataactaagtttttc
gataaggtgttggatagtggatctaattctgttgctgctggtttagagactgatgaatgc
aatacagatgaaaagatggtccacagtgatgctaaagaagcaacagatcaatttattgac
attgttcatggttctgagtctttaagagagtatgctgcttccatcattgatgaggctaaa
ggagatataaatagggcactggacatctattatagtaaacccagtgaaatacctggtgag
catgcaggtgagggaggaggaggactctctagcaaatcaaatcagtttccgcaatgtcca
gaagcgtgctcctcccaggagaacaaaaagacgtcacaaaaatcaggacttgcattgaac
ttatgtgagcagacatcagcagaagaaatggtggacaatgattatgtatctctaccgcct
gaaaaatataagcctaaagagcatgcttgttggaggaatggacagcctgctccatatatc
caccttgtccggacatttgcttccgtcgaaggtgaaaagggcaagatcaaagctatgtct
atgctttgcaacatgtttagaagcgtgttggctctctctccagatgatgtgctgccctct
gtttatctttgcacaaataagattgccgctgaccatgagaatattgagctcaacattggt
ggaagtctgatctctgctgcattggaagaagcatgtggaataagtcggtctactatgagg
gagatgtataatagattgggagatcttggtaaagacaaatctaacgctctcacagttaac
gtatggttatgtcgtttattatcaaaatttccaggtgacgttgctcagctgtgccgacaa
acgcaaaagctactagttcctccacctccacttctagttagagatgtgttttcaactcta
cgaaagataagtgtgcagtcaggtactggaagtactaggcaaaagaaaaacctcatcgtg
aaactaatgcgctcttgtagagagaaagagataaaatttcttgtcagaacattggcccgt
aatttaaggattggcgctatgttgagaactgttctacctgcactagggagagcaattgtt
atgaattctttctggaattgccataacaaagaaccatcagaaaattgtttcaaagagaaa
ctggagggtgtttctgctgcagtagttgaggcctataatatacttccttctctggacgtg
gttgttccttctctcatggaaaaagacattgagttttcaacatcaactctgtcaatgatc
ccagggatacctataaaacccatgcttgcaaaaattgccaacggggttcaagattttatc
aagctcttccaagacaaggcctttacatgtgaatacaagtatgatggccagcgcgcccag
attcatttgttacttgatggtacagtgcggattttctctcgaaatggggatgaaactact
tccaaatttcctgatctggttgatgttataaaacagtttgcttgccctactgctgagaca
ttcatgttggacgcagaggttgttgcaactgatagaaagaatggaaacaaactcatgtca
ttccaagagttatcaacaagagagcgagggagcaaagacgctttggtaactacaaaaagt
attaaggttgaagtctgcgtctttgtgtttgatattatgttcttcaacggtgaacagctg
ttgactcttcccctccgtgatagacgaagacgtctaaaggaggtcttccctgagactagg
ccaggttttctcgagtatgctacggaaatcactgtgggatcagaagaagcgtctttgaat
aaccaagacactttgtgtagaataaatgcgtttctagaagacgcatttcagtcatcttgt
gagggaatcatggttaagtctttagatgttgatgccggttactgccccacaaagcgttcc
gattcatggcttaaggttaagcgagattatgtagatggattaggtgacacattggattta
gttcctataggtgcttggcatggcaacgggagaaaagcgggatggtatagtccattcctc
atggcctgctacaaccctgagactgaggaattccagagtgtctgccgtgtcatgtctggg
ttttctgatgccttttacatcgagatgaaagaattctactccgaggataagatccttgcg
aaaaagccgccatactacagaacaggggagacaccagacatgtggtttcccgcagaggtt
gtttgggaaatcagaggagcggatctaaccgtctcacctgtacacagtgcggctttaggt
ctggtacatccatcacgaggcatctccgttaggtttccgagattcatctgtaaaagggcg
gatagggatccggaggaatgcagcacggctgcagatatagcagagatgtttcatgctcaa
accagaaaaatgaacattaagtctcaacactaa
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