Brassica oleracea (wild cabbage): 106297447
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Entry
106297447 CDS
T04124
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106297447
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106297447
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106297447
NCBI-ProteinID:
XP_013589140
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Position
C1:complement(9427307..9434618)
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AA seq
393 aa
AA seq
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MTPFFILCLSVTLFLCQSLVGAINNGYYGYNPVASYLPEKPQNIMNPVDSCWRLKSDWTA
NRKDLADCAVGFGSSALGGKKGSIYVVTNPNDNAANPQPGSLRYGVIQDKPLWITFAKDM
VLTLENELMVNSYKTIDGRGAKVEIAYGPCITIQEVTNVIVHGIRIHDCKPGKYGMVRSS
TTHVGHRKGSDGDAIAISGSSNIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQHDKV
MLLGHNDDFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSAD
PTIFSEGNYFIASDNSNSKEVTKREVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSVALPY
SSAQRFPVAPGNLVPSLTADAGPLNCYRNRPCY
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgactcctttcttcattttgtgtctctccgtgacactattcttatgtcagtccttggtt
ggagccattaacaacggctattacgggtataacccggtggccagctacctacccgagaaa
cctcagaacatcatgaatccggtggactcgtgttggcggctcaagtctgactggacggcc
aatcgcaaagatttagccgattgtgccgttggatttggttcatcagccttgggcggcaag
aaaggtagtatatatgttgtcaccaaccctaatgataatgcagcgaaccctcaacccggt
tctctgcgatacggtgtgatccaagacaagccgctgtggatcactttcgctaaggatatg
gtcttaaccttagagaacgagctcatggtcaatagctacaagaccatcgatgggagaggg
gcaaaagtggaaattgcgtacggaccttgtattacgatacaagaagtgacgaacgtaatt
gtgcacggtatcaggatccacgactgcaaaccgggcaagtacggaatggtgaggagtagc
acaacgcacgtaggtcaccggaaaggatcggacggtgatgcgatcgcgatttccggttcg
tctaatatttggatcgaccattgttacctagcgagctgtactgacggtctcatcgatgtg
atccatgcttccacgggaatcaccatttccaacaactattttactcagcatgataaagtg
atgttgcttggacacaacgatgatttcgtgcaagatgtgaaaatgaaagtgaccgttgca
ttcaatcattttggaccaggacttgtggagagaatgccaagggtacgacgagggtacgct
cacgtggcaaacaatagatacgataaatggataatgtatgcaattggtggtagcgccgat
ccaaccattttcagtgaaggcaactatttcattgcttctgataattctaacagcaaagag
gtgacaaagagagaagttaaaggagggtggaacaattggagatggagaacttcaaaagac
gttttcaagaacggcgcttacttcgttccttctggttacggcagcgttgcgcttccatat
agttctgctcagcgattcccagtcgctccagggaacttggttccttctctaaccgcagac
gctggccctcttaactgctaccgcaaccgcccatgttattag
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