Brassica oleracea (wild cabbage): 106297735
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Entry
106297735 CDS
T04124
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106297735
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106297735
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106297735
NCBI-ProteinID:
XP_013589391
UniProt:
A0A0D3A623
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Position
C1:complement(11915513..11917423)
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AA seq
406 aa
AA seq
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MQTNKLFISIVSFLLYAPLMFSSPVPDPEAIVEEVHKSINASVAARRKLGYLSCSTGNPI
DDCWRCDSNWEKNRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDDPVTPKPGTLRHAVI
QDEPLWIIFQRDMTIHLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHLH
DCKQGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCDDGLIDAIMGSTAI
TLSNNYMTHHDKVMLLGHSDTYTRDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWEMYAIGGSANPTINSQGNRFVAPNIRFSKEVTKHEDAPESEWKSWNWRSSGDLLLNG
AFFTPSGGASSSSYAKASSLGARPSSLVGPLTVGSGALNCRKGSRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcagacaaataagctctttatctccatagtctccttccttctctatgctccattgatg
ttctcttcaccagttccagacccagaagctatcgtcgaagaagttcacaagagcattaat
gcgtcggttgcagcaagaaggaagctaggctacctctcatgttccaccggtaaccctatc
gacgactgttggcgatgcgactcaaactgggagaaaaaccgccaacgtctcgccgactgc
gccatcgggttcggcaagaacgccatcggcggccgtgacggtcgtatctacgtggtaacc
gactcaggaaacgacgacccagtgacccccaagcccggaacgttaagacacgctgtgatt
caagacgagcccttatggatcatcttccagcgagacatgaccattcatctcaaagaagag
ctcatcatgaactctttcaagaccatagatggtcgtggcgcgtccgtgcacatcgctggt
gggccttgcatcacgatccagtacgtgaccaacattatcatccacgggattcatttacac
gactgcaagcaaggtgggaacgctatggtgcgaagctccccacggcattttgggtggaga
acgatatccgatggtgacggcgtgtctatcttcggagggagtcatgtttgggttgatcat
tgttcgttgtctaactgtgacgatgggcttattgatgctataatgggctcgacggctatt
actttgtctaacaattacatgacgcatcatgataaggtcatgttgcttggtcatagtgat
acttacactcgtgacaagaatatgcaaatcaccattgcttttaaccattttggtgaagga
cttgttcaaagaatgccaaggtgtagacatgggtacttccatgtggtgaacaatgactac
acacattgggagatgtacgcgattggtggaagtgctaatcctactatcaatagtcaaggg
aacagatttgtggccccgaatatcagatttagcaaagaagtgactaagcacgaggacgcg
cccgaaagcgagtggaagagctggaactggagatcatctggtgatttgttgctaaacggt
gcgttttttacgccttctggtggtgcttcctcttctagctatgccaaggcttccagtctt
ggggctcgaccgtcttctctcgttggcccgttgacggttggttctggtgcgctgaattgc
cgcaagggttcacgttgctga
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