Brassica oleracea (wild cabbage): 106297781
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Entry
106297781 CDS
T04124
Name
(RefSeq) exosome complex component RRP41-like
KO
K11600
exosome complex component RRP41
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106297781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106297781
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106297781
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
106297781
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GFIT
Motif
Pfam:
RNase_PH
zf-RVT
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
106297781
NCBI-ProteinID:
XP_013589406
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Position
C6:complement(23441373..23445224)
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AA seq
342 aa
AA seq
DB search
MADVLSNNRRRRHRERILNDIEEDINKLRIGGLRDMDDVPLWRSEEGKFGNRFSTKKTWH
QLRTRQSICPWSRGIWFPESTPKYSFMIWIAIKNRLQTGDKMQAWNATINAECTLCHEVQ
ETCHHLFFQCTYSSKLCCFEMGNTKVIAAVYGLREIQNKSQQKNGHALVLCEYSMAHFNT
GDRRRQKNDMRSTEISLVIRQTMEACILTELLPHSQIDIFLQVLQADGGTRSACIINAAT
LVLADAGVPMRDLSVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPKLDKVTLLQMDA
KLPMETFETVFALASEGCKAIAERVRKVLQENTKQLEYRRAA
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgtcctctcaaataacaggaggcgaagacatagagagcgcattctaaatgat
atagaggaagacataaataaattgcgcattggagggttaagggacatggatgatgtcccg
ttatggagaagcgaagaaggaaaatttggaaaccgattctccactaaaaagacatggcat
cagctgaggacgaggcaatctatctgtccttggagcagaggcatatggttccccgagtcc
accccgaaatactcatttatgatctggattgcaataaagaacaggttgcaaacaggagat
aaaatgcaagcttggaatgctaccataaacgcagagtgtactctatgtcatgaagtgcaa
gagacttgccatcatctctttttccaatgtacctactcatctaagctctgctgttttgag
atgggtaatacgaaagtcattgcagctgtttatggccttagagagattcaaaacaagagc
caacagaagaatggtcatgcattggtgctgtgtgaatatagtatggctcatttcaatacg
ggtgatcgtagaagacagaaaaatgacatgcgatcaacagagatatctcttgtcatccgt
cagacaatggaagcttgcatactaaccgaactgttgcctcattctcagattgacattttc
cttcaggtcctacaagctgatggaggaacaagatcagcttgtattatcaatgctgcgacg
ctagttcttgcagacgctggggttccgatgcgtgatctttctgtttcctgcagtgctgga
tacttaaacagcactccacttcttgatcttaactatgtcgaagacagcgctggaggagct
gatgtaaccgtcggcattctacctaaactagacaaagttacactccttcagatggatgca
aagttaccgatggaaacatttgaaacggtctttgccttggcttctgaaggctgcaaagcg
attgcagagagagtacgcaaggtacttcaagaaaacaccaaacagctagagtatcgtcgt
gctgcataa
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