Brassica oleracea (wild cabbage): 106298194
Help
Entry
106298194 CDS
T04124
Name
(RefSeq) polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106298194
09123 Folding, sorting and degradation
03018 RNA degradation
106298194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106298194
03041 Spliceosome [BR:
boe03041
]
106298194
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106298194
mRNA cycle factors
Stress granule specific factors
106298194
Spliceosome [BR:
boe03041
]
Complex C
Other components
Complex C specific factors
106298194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_7
RBD_DEAH11
RRM_RdRP1_2
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
106298194
NCBI-ProteinID:
XP_013589724
UniProt:
A0A0D3CZX7
LinkDB
All DBs
Position
C6:complement(35701629..35704342)
Genome browser
AA seq
684 aa
AA seq
DB search
MAAAVASGIAPTTAMVDQVPNQPAVTVASPQSTTPFTQVAAVAAAAAAAEALQAHPNSSL
YVGDLDQSVNEAHLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPDDAMRAMDSLNY
TPIRDRPIRIMRSNRDPSTRLSGKGNVFIKNLDVSIDNKALYDTFSTFGTILSCKVAMDV
TGRSKGYGFVQFEKEETAEAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGTVPRFTNV
YVKNLPKEIGDDELKKTFGKYGDISSAVVMKDQSGSSRCFGFVNFESPEAAAVAVEKMNG
ISLGEDVLYVGRAQKKSEREEELRRKFELERISRFEKLQGSNLYLKNLDESVNDEKLKEM
FSEYGNVTSCKVMMNSEGVSRGFGFVAYSCPEEALRAMNEMNGKMIGRKPLYIALAQRKE
ERRNHLQTLFSHMRPNGTMSPMASPMPGFHHHPPGGAMAGPHHPMYVGQNGQGLVPSQPM
GYGYQLQFMPGVRPGSGPANFMMPYPLQRQNQPGPRVGFRRGGTNMQQHFQQQQMMQQNA
SPGMRYMGGPGNRRNGMEGTGPQGIIPLPLDASAISHNASQNPQKPPLLPISKLMSALAL
ANPASHPQMLGEQLYPLVEKQEPVHTAKVTGMLLEMDQAEILHLLESPEALKAKVSEALD
VLRLSANPPAVSSVDDQFAPSSTE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgttgcatcaggaattgccccgacgacggcgatggttgatcaagtccct
aaccaaccagcggtcacggtcgcgtctcctcaatccacgactccgttcactcaggtagcc
gccgtggctgcagccgctgcggctgcagaagcgttacaagcgcaccctaactcgtctctc
tacgtgggagatttagaccaaagtgtcaatgaggcacacctgttggatctgttcaaccaa
gttgctcctgttcagacagttagggtttgtcgtgatctcactcgccgctctcttggttac
gcttacgtcaacttcgctaatcccgatgatgcgatgcgagcgatggatagtctgaactac
actcccatcagagacagaccaataaggatcatgcgttcgaaccgtgacccgagcacgaga
cttagcggtaaaggcaacgttttcatcaagaacctcgacgtgtcgatcgataacaaagct
ttgtacgatacgttctcgaccttcgggactatactctcttgcaaggtggcaatggatgtt
accggaaggtccaaaggttacggatttgttcagtttgagaaggaggagactgctgaggct
gctatcgacaagcttaacggaatgctgcttaatgacaagcaagtgttcgtgggacacttt
gtgaggcgtcaggacagggctcggtctgagagcgggacggtccctaggtttactaacgtg
tatgtgaagaatcttcctaaggagattggtgatgatgagctgaagaagacgtttgggaag
tatggtgacatttcgagtgcggttgtgatgaaggatcagagtgggagctcgaggtgtttt
gggtttgtgaatttcgagagccctgaggctgctgcggtggcggttgagaagatgaatggg
attagtcttggggaggatgtgttgtacgttgggagggcgcagaagaagtctgagagggag
gaggagctgaggaggaagtttgagttggagaggatcagtaggtttgagaagttgcaaggt
tcgaatttgtatttgaagaatcttgatgaaagtgtgaatgatgagaagcttaaggagatg
ttctctgagtatgggaatgtgacctcatgcaaggttatgatgaactcagaaggtgtgagc
agagggtttggttttgttgcttattcatgtcctgaagaagctttaagagctatgaatgag
atgaatggtaagatgataggaaggaagcctctttacattgctttggctcaacgcaaggaa
gagaggaggaaccaccttcagactctattttcccatatgagacctaatgggacaatgtcg
ccaatggcatcaccaatgcctggtttccatcaccacccaccaggaggtgcaatggcaggt
ccacaccatcctatgtacgtcggccagaacgggcaaggtctggtgccgtcgcagcctatg
gggtatggttaccaacttcagttcatgcctggggtgcgtccaggttctggtccggccaac
ttcatgatgccttaccctcttcaaaggcagaaccagcctggtccccgtgttgggttcagg
cgtggtggtactaacatgcagcagcacttccagcagcaacagatgatgcagcaaaatgca
agtccgggaatgagatacatgggaggcccggggaacaggaggaatggaatggaaggaact
ggtccacaagggatcatccctttgccattggatgcatctgcaatctctcacaatgcttct
caaaacccacagaagccaccactcctccccatttctaagctcatgtctgccttggctctg
gctaaccctgctagtcacccacagatgcttggggagcagctttacccactggtggagaag
caggagccagttcatacggccaaagttacagggatgttgctggagatggaccaggccgag
atcttacaccttctggagtcacctgaagctcttaaggccaaagtctctgaggcgctggat
gtgctcaggctctctgctaatccaccagctgtgtcctccgttgatgaccagttcgcaccc
tcgtcaaccgagtga
DBGET
integrated database retrieval system
