KEGG   Brassica oleracea (wild cabbage): 106299956
Entry
106299956         CDS       T04124                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03030  DNA replication
boe03410  Base excision repair
boe03420  Nucleotide excision repair
boe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106299956
   03410 Base excision repair
    106299956
   03420 Nucleotide excision repair
    106299956
   03430 Mismatch repair
    106299956
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:boe03032]
    106299956
   03036 Chromosome and associated proteins [BR:boe03036]
    106299956
   03400 DNA repair and recombination proteins [BR:boe03400]
    106299956
DNA replication proteins [BR:boe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    106299956
  DNA Replication Termination Factors
   ELG1-RFC complex
    106299956
Chromosome and associated proteins [BR:boe03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    106299956
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     106299956
  Check point factors
   HRAD17(Rad24)-RFC complex
    106299956
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 AAA_22 AAA_14 AAA_11 AAA_assoc_2 AAA_16 AAA_5 DNAX_ATPase_lid RuvB_N nSTAND_NTPase5 DUF815 ATPase_2 AAA_30 AAA_19 AAA_7 ResIII AAA_3 AAA_24 bpMoxR nSTAND3 MCM AAA_28 TIP49 Mg_chelatase nSTAND6
Other DBs
NCBI-GeneID: 106299956
NCBI-ProteinID: XP_013591436
UniProt: A0A0D3CW66
LinkDB
Position
C6:25939259..25941537
AA seq 361 aa
MTETTSAMDIDVDENLPRKPSNKGKDVAGFVAPPQSKTTPWVEKYRPQSLDDVAAHRDIV
DTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDVVR
QQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNK
IIPALQSRCTRFRFAPLDPVHVSQRLKHVIEAEGLDVSESGLAALVRLSNGDMRKAMNIL
QSTHMASEKITEEDVYLCTGNPLPRDIEQISHWLLNEPFAESYKKISEMKTRKGLAIVDI
VREVTMFVFKIKMPSNVRVQLINDLADIEYRLSFGCNDKLQLGAIISTFTHARSALVAAA
K
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgactgagactacatcggcgatggacattgacgtagacgaaaatctccctcgcaagccg
agtaacaagggcaaagacgtcgccggtttcgttgctccgccgcagagcaagacgacgcct
tgggtcgaaaaatacagacctcaatcgctagacgacgtcgcagcacatcgcgacatcgtt
gatacaattgataggctgaccaatgagaacaagttgccgcatcttctgttgtatggtcca
cctggtactggcaaaacatccaccattctagctgttgcacggaagctgtatggacccaag
taccgtaatatgattcttgaactcaacgcctcggatgatagagggattgatgttgtgagg
cagcagattcaagatttcgctagcactcagagcttctcactaggaaagtcttcggtgaag
ttggttctgctggatgaagcagatgccatgacaaaagatgctcagtttgccctgcgtaga
gtgattgagaaatacacaaagagtactaggttcgcgctcatcggaaaccatgtcaataag
atcatcccagctttacagtccagatgtacccgttttagatttgctcctcttgatcctgtt
catgtgagtcaacgtcttaaacatgtcatagaagctgaagggcttgatgtaagcgagagt
ggtttggcggctcttgtacggctgagcaatggagacatgaggaaagccatgaacattttg
cagtcaacgcatatggcgtcagagaaaatcacagaggaagatgtgtacctctgcactgga
aacccactacccagggacattgagcagatatctcactggcttctgaatgaaccgtttgct
gagagctacaaaaaaatatcagaaatgaagacgagaaaaggacttgccattgttgatatc
gtcagagaggttaccatgtttgtgtttaagatcaagatgccttcaaatgtcagagttcaa
ctgatcaacgatttggcagacatcgagtacagattgagttttggatgcaacgataaactg
cagcttggagctatcatttcaactttcactcacgcccggtctgcattggttgctgcagca
aagtaa

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