Brassica oleracea (wild cabbage): 106299989
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Entry
106299989 CDS
T04124
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03013
Nucleocytoplasmic transport
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106299989
03015 mRNA surveillance pathway
106299989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106299989
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106299989
mRNA cycle factors
P-body specific factors
106299989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6279
Motif
Other DBs
NCBI-GeneID:
106299989
NCBI-ProteinID:
XP_013591473
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Position
C6:complement(12500948..12504162)
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AA seq
474 aa
AA seq
DB search
MMKDPLAKRKVVVRHLPPSLSESDLLSQIDSRFGDRYYWFSFRPGKSNYKTQKHSRAYFG
FKAPEDVYDFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPCDKKDPREGSITKDPDYL
EFLELLAQPVENLPSAEIQLERREVEQSGASKSAPIVTPLMEFIRQKRATVIGSQQQGSL
DGRRGGRRARAISANKPSSRPSKRNSEKKKYVEKDNSKGVPRTASSDAGSSKQDYNQANS
SAASVIDSSLPGIALTMDSGKKKILLLKKDRDNLVNSPQQAEQQMETNLSGSSSTSGQNQ
KIDVGGRLIKGILRRNETRPSQASSLVQPEQRVEPTEAENSKRPPRPANIRAGKDYHVSG
TNSEKLERRARNKDRPDRVVWAPRRADGSNITEDQPTSSAANNGEVVNSSGGHTLENGSA
RHSSRRIGARNRKEDGFAMTIEGKTPRRGGGGGGGGGPSSHEKQMWIQKSSSGT
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaggaccctctagcgaagaggaaggtggtggtaaggcacttgccgccttctctt
tctgagtccgatctgttatcccaaatcgactctcgtttcggtgatcgttactattggttc
tcctttcgtcctggcaagtccaactataaaactcagaagcattcacgggcctactttggt
ttcaaggcaccagaagatgtttatgactttgctgcctttttcaacggccatgtctttgtt
aatgagaagggtgctcagtttaaggccatagttgaatatgcgccttcacagcgtgtgccc
aaaccatgtgacaagaaagatcctcgtgaaggctctattaccaaagaccctgattatctt
gaattccttgagcttcttgctcaacctgttgagaatctcccaagtgctgaaatccagctg
gagagaagagaagttgagcagtctggcgcttcaaaatcggctcccattgtcactcctctt
atggaattcatacgtcaaaaacgtgctactgtgattggatcacagcaacagggttcatta
gatggtcgaagaggaggcaggagagccagagcaatctctgcaaacaagccaagttcgaga
ccttcgaaacgaaactctgagaagaaaaagtatgtggaaaaagacaattcgaaaggtgtg
ccccggacggcttcatcagatgccggcagctccaagcaagattacaatcaggcaaattca
agtgcagcctccgtcattgatagctctctcccagggattgcattgactatggattctggg
aagaaaaagatcttgctcctgaaaaaagaccgtgacaaccttgttaactctccacaacaa
gcggaacagcagatggaaactaatctctccggaagctcctcgacttcaggacagaatcag
aagatcgatgttggtgggaggttgattaagggaatacttcggagaaatgagacgcggcct
agccaggcttcatctttggtccagcctgagcaaagagtggaacccacagaagcagaaaac
tccaagcgtcctcctcggccagccaacattcgagcagggaaagattatcatgtttctggt
accaacagtgaaaagctagagaggcgtgcaagaaacaaggacagacctgatcgtgttgtg
tgggctcctcgccgtgctgatggctccaatatcaccgaggatcagcctacatcttcagca
gcaaacaatggagaagtggtgaactcctctggtgggcacactcttgagaatggttctgct
agacattctagtcgccgtattggagctcgcaatagaaaggaagacggctttgccatgact
attgagggtaaaacaccccggagaggtggtggtggtggtggtggtgggggtcccagttca
catgagaagcaaatgtggatccaaaaatcatcatccggtacttga
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