Brassica oleracea (wild cabbage): 106300009
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Entry
106300009 CDS
T04124
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106300009
03036 Chromosome and associated proteins [BR:
boe03036
]
106300009
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
106300009
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
106300009
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HTH_44
Tex_central_region
Spt6_S1
HHH_9
HHH_3
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
106300009
NCBI-ProteinID:
XP_013591501
UniProt:
A0A0D3CY72
LinkDB
All DBs
Position
C6:complement(31533878..>31540434)
Genome browser
AA seq
1590 aa
AA seq
DB search
MSRNVVSDEEDDHELEDEDGEPVHADPVGNADNDDDDEEDEEGEDEYENDGFIVGDEEEE
EEEDDEEEEKKNSDEERQKKKKKRRKMDEDLDEDDYLLLQDNDVKFQKRKFKRLKKAQRE
REGGQGGSSDDEFDRSGGAGRSAEDKIKDNLFDDVDDLPDDVGDEEELAVEEDVVGSEDE
MADFIVDEDGNGQPRRGDPRKKRYRQGSDMSAIHDANEIFGDVGELLSLRKKGLASSERM
ERKLEDEFEPTILSEKYMTGKDDEIRQVDIPERMQISEDSTGSPPVDELSIEEESSWIYA
QLTSMLKDPDGLYVLGGQGFSVSKDDIAKFLELHHVQKLEIPFIAMYRKEQCRSLLDSSD
NSDLNIEKKPETKWQKVLWMIQDLDKKWLLLRKRKTALHGYYAKRFEEESRRVYDENRLN
LNQYLFESVMKSLKVAETEREVDDVDSKFNLHFPAGEVGVDEGQYKRPKRKSQYSVCSKA
GLWEVANKFGYSAEQLGLALSLEKLVDELEDAKETPEEMAMNFMCAMFENSQAVLKGARH
MAAVEISCEPSVKKYVRGIYLENAVVSTSPTAEGNGVIDSYHQFAGVKWLREKPLSKFEG
AQWLLIQKAEEEKLLQVTFKLPENYMNRLVSDCYEHYLSVGVSKYAQLWNEQRKLILEDA
LHAFILPSMEKEARNLLTSRAKSRLLSEYGQALWDKVSAGPYQKKEMDISSDEEAAPRVM
ACCWGPGKPPNTFVMLDSSGEVLDVLYAGSLTLRSQNVNDQQRKKNDQDRVLKFMMDHQP
HVVALGAVNLACTRLKDDIYEVIFQMVEEKPRDVGQMDDLTIVYVDESLPRLYENSRISG
EQLPQQSGIVKRAVALGRYLQNPLVMAATLCGPGREILSWKLHPLESFLQVDEKYGMVEQ
VMVDITNQVGIDINLAASHEWLFSPLQFISGLGPRKAASLQRSLVRAGSIFVRKDLIMHG
LGKKVFVNAAGFLRIRRSGLAASSSQFIDLLDDTRIHPESYGLAQELAKDIYDQDVRGDS
NDDEDAIEMAIEHVRDRPGSLRKVVLEEYLASKNRENKKETYSNIMRELSCGFQDWRIPF
KDPSPDEEFYMNSGETEDTIAEGRIVQATVRRLQSGRAICVLDSGLTGMLSKEDFADDGR
DIVELSDRLKEGEILTCKIKSIQKLRYQVFLICKESEMRNNRHQRNQNLDPYYHEDRNSL
QIEKEKARKEKELVKKHFKSRMIVHPRFQNITADQATEYLFDKEFGESIVRPSSRGLNYL
TLTLKIYDGVYAHKEIVEGGKESKDITSLQRIGKTLTIGEDTFEDLDEVMDRYVDPLVSH
LKTMLNYRKFRKGTKSEVDELLRIEKSENPARIVYCFGISHEHPGTFILSYIRSTNPHHE
YVGLYPKGFKFRKRMFESIDKLVAYFQRHIDDPLQETVPSIRSVAAMVPMRSPADRGSSG
GGSWGGNSDRSSAPRPGRGGEYRNGGGRGDGHPSGAPRPYGGRGRGRGRRDNNIEREDGN
GDWGNNNTGSGDGGWGSSGGGGGGGWGSESGGKKNDGAGGWGSESGGGGGGWGNESGGKK
SSEDGGWGKEASGKKSGEDGGWGNSGGGGW
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggaacgttgtttccgacgaagaagacgatcacgagctcgaggatgaggacgga
gagccagttcatgcagatcctgtcggtaatgctgacaacgatgatgatgatgaggaggac
gaagagggtgaggatgaatatgagaatgatgggttcatagttggtgatgaggaagaagaa
gaggaggaagatgacgaagaagaagagaagaaaaatagcgatgaagagaggcagaaaaag
aagaagaaacgaaggaaaatggacgaagatcttgatgaagatgactatctgcttctccaa
gataacgatgtcaaattccaaaagaggaagtttaagaggttgaagaaagctcaaagggaa
agggaaggtggccaggggggatcatctgatgatgagtttgataggagtggtggagctgga
agaagtgccgaggacaagatcaaagacaatctctttgatgatgttgatgatttgcctgat
gacgtaggcgatgaggaggaattggcggtggaagaagatgtagttgggagcgaggatgaa
atggctgatttcatcgtagatgaagatgggaatggtcagcctaggaggggagaccctagg
aaaaagagatataggcaaggatcagatatgagtgctatacatgatgctaacgaaatattt
ggtgatgtcggagagttattgtcacttcgtaagaagggtctggcatctagtgaaaggatg
gaaagaaagctcgaagatgagtttgagccaactattctttctgaaaagtacatgactggg
aaagatgatgaaatccgccaagttgatattcccgagaggatgcagatatctgaagacagc
actggaagccctcctgttgatgaacttagcattgaggaagagagcagttggatatatgca
cagcttacttcgatgctaaaagatcctgatggactttatgttttaggaggacaaggtttc
tcggtcagcaaggatgatattgcaaaatttttggagcttcatcatgtgcagaaactagag
ataccatttatagccatgtaccgaaaggagcaatgccggagcttgttggactcttctgat
aatagtgacctcaatatagagaagaaacctgagaccaagtggcaaaaggtcctctggatg
attcaggacttggataagaagtggctccttcttcgaaaaaggaaaacggcgttgcatggt
tactatgcaaagcgtttcgaagaagagtctaggagggtctatgatgaaaataggctcaat
ctaaatcagtatctttttgaatctgtcatgaagtcgcttaaagtggcagaaacagagaga
gaagttgatgatgtagattccaagttcaacctgcattttcctgccggtgaagttggtgtt
gatgaagggcagtacaagaggccaaagcgaaaatctcaatatagcgtctgcagcaaagca
gggctctgggaggttgcaaacaagtttgggtatagcgcggagcagttgggacttgcattg
tccttagaaaaactggttgatgaacttgaggatgcaaaggaaacaccagaggaaatggca
atgaactttatgtgcgctatgtttgaaaattctcaagctgttcttaagggtgcacggcat
atggctgccgttgagataagttgcgagccatcagtcaaaaagtatgtccgtggcatttat
ctggagaatgcagtagtctcaacgagtccaacagcagaggggaatggagtaatagactct
taccatcagtttgctggggttaaatggttacgtgaaaagccattgagcaagtttgaaggt
gcgcagtggcttctcattcagaaggcagaagaggagaaacttcttcaagtgaccttcaag
ctgcctgagaattacatgaataggctggttagcgactgctatgaacactatctgagcgtc
ggtgttagtaagtatgctcaactctggaatgagcaaagaaaattgatattggaggatgca
cttcatgctttcattttgccatcaatggagaaagaagcaagaaacttgctaaccagcaga
gcgaagagtaggttgctttcagagtatggacaggctttgtgggataaggtgtctgcaggg
ccatatcagaagaaagaaatggacattagctcagacgaggaagctgcaccgagggtcatg
gcatgttgttggggccctggaaagccgccaaatacatttgtgatgctggattcatcggga
gaagtgcttgatgtgctttatgctggatccctcacactgcgatcccaaaatgtcaacgac
caacaacgtaaaaagaatgaccaggatcgtgttttaaagtttatgatggaccaccaaccg
catgttgtggctctaggagctgtcaatttggcttgtactcgtctgaaggatgatatttat
gaagtcattttccagatggtggaagaaaaacctagagatgttgggcagatggatgattta
accattgtttatgtagacgaatcacttcctaggctatacgaaaactctcgaatctcaggc
gaacagctacctcaacagtctgggatcgtgaaacgtgcagttgctcttggacgctatctc
cagaatcctctagtaatggcagcaacgttatgtggtccaggccgggaaatattgtcttgg
aagcttcacccgttggagagttttcttcaggttgacgagaagtatgggatggttgaacag
gttatggttgacataacaaaccaggttgggatcgacattaatttggcagctagccatgag
tggcttttctctcctctacagttcatttctggacttggacctaggaaagctgcatccttg
cagaggtcgcttgtaagagctggttcaatatttgtccgcaaggacctgataatgcacggg
cttggtaaaaaagtttttgtaaacgcagccggtttcttgcgcatcaggaggagtgggctg
gctgctagcagcagccaatttatcgatctactggatgataccagaatacatccggaatcg
tatggtcttgcacaagaattggcgaaagatatttatgatcaggatgtaagaggtgactcc
aacgatgatgaggatgcgatagagatggcaatagagcatgtgagagatcgaccaggctct
ctgagaaaagttgtcctcgaggagtatcttgcaagcaagaaccgggagaataagaaggaa
acttacagtaacatcatgagagagctaagctgtgggttccaggattggcggattcctttt
aaagatccaagtccagatgaagagttttatatgaactcaggcgaaactgaagacaccata
gctgagggcagaattgtccaggccactgttcggagactgcagagtggaagagccatatgt
gtgttagattccggactaactgggatgctttcgaaggaggatttcgcagatgatgggaga
gatattgtggagttgtcagaccggctgaaagaaggcgagatccttacgtgcaagatcaaa
tcgattcagaagctgaggtatcaagtgttccttatatgcaaggagagtgagatgagaaac
aacaggcaccagcggaaccagaatctggatccgtattaccacgaggatagaaacagtctc
cagatagaaaaggagaaagctcggaaagaaaaggagcttgtgaagaagcatttcaagtct
cggatgattgtccatccacgtttccagaacatcactgctgatcaagccaccgagtattta
tttgacaaagaatttggagagagcattgttcgtccaagctctcgaggactcaattacttg
acattgacgctcaaaatttacgatggagtctacgctcacaaggagatagttgaaggtgga
aaagaaagcaaggacatcacgagtcttcagcgtattgggaagacgctaacaattggagaa
gacaccttcgaggatttagatgaggtcatggatcggtatgttgaccctctggtctctcac
ctcaagacgatgcttaactacaggaagttccgtaaggggacaaaatcagaagttgatgag
cttctcaggatcgagaagagtgagaatccagcaaggatagtttactgtttcgggatttca
cacgagcatcctggcacctttatactgtcctacataaggagcaccaatccgcatcacgag
tacgtcggtctataccccaagggattcaagttcaggaaaaggatgtttgagagcatcgac
aagcttgtggcctacttccagaggcatattgatgacccgttgcaggaaacagttccatcg
atcaggtctgttgctgcaatggtgcccatgagaagcccagcagaccgtggctcttctgga
ggaggtagctggggtggtaactcagatcgctcttctgcaccaagaccagggagaggcggt
gagtacagaaacggtggtggacgtggtgatgggcatccaagtggagcgccaaggccttac
ggtggtcgtggtaggggcagaggaaggagggataataacattgagagagaagatggaaat
ggagattggggaaataacaataccggaagtggggatggaggttggggaagtagtggtggt
ggtggtggtggtggttggggaagcgagtctggcggtaaaaagaatgacggtgcaggcgga
tggggtagtgaatctggaggtggtggtggtggttggggaaatgagtctggcggcaaaaag
agcagcgaggatggtggttggggaaaggaggctagtggaaaaaagagcggtgaagacggc
ggttggggaaatagcggcggtggcggatggtga
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integrated database retrieval system
