Brassica oleracea (wild cabbage): 106300121
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Entry
106300121 CDS
T04124
Name
(RefSeq) ATP-dependent RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106300121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106300121
03012 Translation factors [BR:
boe03012
]
106300121
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106300121
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106300121
Translation factors [BR:
boe03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106300121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
AAA_19
AAA_16
Dicer_dimer
nSTAND3
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
106300121
NCBI-ProteinID:
XP_013591652
UniProt:
A0A0D3CPA1
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All DBs
Position
C6:complement(3066986..3072811)
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AA seq
1181 aa
AA seq
DB search
MPYYSAIFRGHIKPNAVVVGAASMFIQHSSLHLFRSPNLLFSRPSSLVRSLHSQRSRVLS
AKAGRSSLEWRVSNLPYFQKQGYGRIAYNDYESSDESDRDVVGSSQSQQMAGSTLDNIDQ
WRFKLTMLLRNGEDQEVVSRERKDRRDFDHISAMATRMGLYSRQYSKIIVISKSPLPNYR
PDLDDKRPQREVVLPFGLQSEVDAHLHAFLDQKKMLIPEMSRPSSSDSLATGYGNYEKPE
TVMQNSLARERILRPRSLQLRSKQQQWVDSPEGQKMVEFRKTLPAYKEKEALLRAISANQ
VIVVSGETGCGKTTQLPQYILESEIEAARGAACSIICTQPRRISAISVSERVAAERGEQI
GESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLIDRSLKGVTHVVVDEIHERGMNEDFLL
IVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTYPVRAHFLEDFLETTGY
RLTSYNQIDDYGEEKTWKMQKQAQFTKRKSQISSAVEGALEAADFKGYQFRTRDSLSCWS
PDSMGFNLIENVLCHIVKGERPGAVLVFMTGWDDINSLKKQLEAHHLLGDPNKVLLLACH
GSMASSEQRLIFDRPPEGVRKVVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPC
LLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVYDAFADYQQPELLRTPLQSLCLQIKS
LGLGSISEFLSRALQPPEALSVQNAVEYLKLIGALDDNENLTALGKNLSMLPVEPKLGKM
LILGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESARSKFSGRDCSDHLTLIRAYSG
WKDAERTRSGNEYCWQNFLSAQTLKAMDSMRKQFFFLLKEASLIDNVESCSKLSYDEHLV
RAIICAGLFPGVCSVVNKEKSITLKTMEDGQVLLYTSSVNGNVQRIPFPWLVFNEKIKVN
SVFLRDSTAVSDSVLLLFGDKVSSGGFDGHLKMLGGYLEFFMKPSLAYTYLSLKRELDEL
IQNKLVNPKLDIQLYDKLMTAIRLLVSEDQCEGRFVFGRKALSPTTTKKLKVVGTQLPNS
GGENDKNHLQTVLARAGHGTPVYKTRQLKNNQFRAMVTFNGLDFMGKPCSSKKNAEKDAA
HEALLWLQGESKSSLNDLNHMSTLLKKDKSKKSARAPARWN
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgccttactactctgcaattttccgaggacatatcaaacctaacgccgtcgtcgtcggt
gctgcctccatgtttatccaacatagctccctccacctctttcggagccctaacttgctg
ttcagcagaccatcgtctctagttaggtctcttcattctcagaggtcgagggtcttgtcc
gccaaagcaggtcgttcttcgctggagtggagagtatctaacttaccctactttcaaaag
caagggtatggaagaatcgcttacaacgactacgagtcaagcgatgagtcagaccgtgac
gtcgtcggctcttctcagtctcagcaaatggcgggttcgactcttgataacatcgaccaa
tggagattcaaacttactatgcttctacggaacggagaagaccaagaagttgtgtccagg
gagaggaaagatcggcgtgattttgatcacatctctgcaatggcaactagaatgggatta
tacagccgtcagtactcgaagatcattgtcattagcaaatctcccttgccgaactataga
cctgatcttgatgataagcgccctcagagagaggtggttttgccttttggcctacaaagt
gaggtagatgcccatctacatgctttcctggatcagaagaaaatgttgattccagagatg
tccaggcctagtagtagtgacagcttagcaaccggttatggaaactacgagaaaccagag
acggtgatgcagaatagtcttgccagggaaagaatactccgtcccagaagtctgcaactt
aggagcaagcaacagcagtgggtggattctccggaaggccagaaaatggtagagttccgc
aaaacacttcctgcatacaaagagaaagaagcactattaagagctatttcagcaaaccag
gtcatagtggtttctggagaaactggctgtggtaaaacaacgcagcttcctcagtacata
ttagaatctgagatcgaggctgcccgtggagctgcttgcagcatcatatgcacacagcct
agaagaatatctgctatttctgtttctgaacgagttgctgcagaacgtggagaacaaata
ggagaatccgttggctacaaagtgaggcttgaagggatgagggggagagacacacgtctt
ctcttttgtacaactggtgttttgcttagaagactacttatagatcgtagcttgaaaggt
gtgactcatgtcgtagttgatgaaattcatgaacgtgggatgaatgaagattttctgctt
attgtcttgaaagatctccttcctcgtcgacctgacctgaagttgattttgatgagtgcc
actttgaacgctgagctcttttcttcttattttggtggtgcaccagccatgcatatccca
gggtttacatatcctgtccgagcccatttcttggaggattttcttgagactactgggtac
aggttgacatcatataatcaaattgatgattatggcgaggaaaagacatggaagatgcaa
aaacaagctcaattcacaaaaaggaaatcccagatatcctctgctgttgagggtgctctt
gaagctgcagacttcaaaggataccagtttcgtactagagactctttgtcatgctggagc
cctgattcgatgggctttaaccttattgagaatgtgctttgtcacatcgtcaaaggagag
agaccgggtgctgttttggtattcatgactggttgggatgatattaactccttgaagaaa
cagctcgaagctcatcatcttctgggagaccccaacaaagttttgcttcttgcctgtcac
ggatccatggccagctctgaacagaggctgatttttgatagacctccagaaggagttagg
aaagtagtgctggccaccaacatggccgagacaagtatcaccatcaatgacgttgtattt
gtggttgattgtggaaaagcaaaagagacgtcttatgatgcgcttaacaacaccccttgt
ctgcttccatcttggatctcgaaggcagctgctcgccaaagaagaggaagagcaggtcgt
gtaatgcctggagagtgttatcacctttatcctagatgcgtctatgatgcttttgctgac
taccagcagccagaactcctgaggactccgttacagtctctgtgtctacaaatcaaaagc
ttaggacttggaagcatttcagagttcctttccagggcactgcaacctcctgaagcttta
tcagtccagaatgctgttgagtatctaaaacttattggtgctcttgatgacaacgaaaat
ttaacagctttagggaaaaatctgtcgatgcttcctgtggagcctaaacttgggaaaatg
cttattttaggagctatcttcaattgtctagatccaataatgacagttgttgctggtctt
agtgtcagagacccattcctgatgccatttgacaaaaaggatctagcagagtcggcaagg
tccaagttctctggccgtgattgcagtgatcatttgacactgattcgagcatacagtggt
tggaaagatgctgaaagaacacgttctggtaacgagtattgctggcagaactttctatct
gcccaaactctaaaggccatggactctatgcggaaacaattcttctttctcctgaaggag
gcttctcttattgataacgttgaaagttgcagtaagctgagctatgatgaacatcttgtc
cgcgccatcatctgtgctggcctgttcccgggagtttgctctgttgttaataaggaaaag
tcaattacgctcaagacaatggaggatgggcaagtgcttctatacacgagttctgtgaat
ggcaatgtacaaaggattcctttcccttggctagtcttcaacgaaaaaatcaaagtcaat
tctgtgtttcttcgagactccactgctgtctctgactcggtgcttcttttgtttggggat
aaagtatcttccggtggatttgatggtcatctcaaaatgctgggaggatatctagagttt
ttcatgaaaccctctttagcatatacatacctttctttaaaaagagagctcgacgagctt
attcagaataagcttgtgaatccaaagcttgatattcaactgtacgacaaactcatgact
gccattagattacttgtgtctgaagaccaatgtgagggcaggttcgtctttggccggaaa
gctctgagccctacaacgacgaagaagttgaaagtagtagggactcagctgcccaacagc
ggcggggaaaacgataagaaccaccttcagacagtgcttgcccgagcaggacatggaaca
ccagtgtacaagacaaggcagctgaagaacaaccagtttcgggccatggttactttcaat
ggattggatttcatgggaaagccatgtagtagtaagaaaaacgcagagaaggatgcagct
cacgaggcgttgctgtggttacaaggcgagtctaagtcgagtttgaatgatcttaaccac
atgtcgacgctcttaaagaaggacaagagtaaaaaatccgcaagggcacctgctagatgg
aattaa
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