Brassica oleracea (wild cabbage): 106300297
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Entry
106300297 CDS
T04124
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106300297
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106300297
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106300297
NCBI-ProteinID:
XP_013591861
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Position
C6:18545899..18549680
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AA seq
489 aa
AA seq
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MMLQRSCIVLFSLSLFVPYMSLAMLNKTLLLLPHPDPELVALDVHRRVNASLWRRQAMDT
TDQTGSNPCFTGNPIDDCWKCDPNWPNNRQGLADCGIGFGQYALGGKGGRFYFVTDSSDD
DAVEPKPGTLRYGVIQVEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCIT
LQYVSNVIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIFGSKDIWIDHCSLSR
CKDGLIDAVMGSTGITISNSFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLIQRM
PRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRFTAPSNPFAKEVTKRVETPDGEW
KGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFIDQITFHSGVLGVGGRNN
NLGMWTTTGSEGNGGLDSYNDYTDEMSGTGSTNRLSFSVIVLSFMLNLLSYLVIFTSSTQ
MFSFQPKCS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgatgcttcaaagaagctgcattgtactcttctctctttctctgttcgttccatacatg
agtttggccatgctcaacaaaactcttcttctcctaccgcatcccgacccagagctagtc
gctcttgatgttcataggagagttaatgcctctctgtggagacgtcaagctatggacacg
acggaccaaaccggttcaaacccgtgcttcaccggaaatccaatcgacgactgttggaaa
tgcgacccgaactggcccaataaccgacaagggctagccgattgcggaatcgggttcgga
cagtacgcattgggaggcaaaggcggtcggttttacttcgtcactgattcttccgacgac
gatgctgtcgagcctaaaccgggcactctcagatacggagtgatacaagtagagccattg
tggatagtgttcccaagcaacatgatgataaaattaaagcaagagttaatattcaatagt
tacaagactcttgatggaagaggggctaatgttcatattgttggtggtggctgcatcact
cttcaatatgtctccaatgttatcattcacaacattcatatccaccattgctaccagtcc
ggtaatactaacgtgcggtcaagtccaacgcattatggattcagaactaaatcggacggt
gatggtatctccatcttcggatcaaaggacatatggatcgaccattgttctctctcaaga
tgtaaagatggtctgatagatgctgtgatgggatctaccgggattacaatatcgaacagc
ttcttctcacaccacaatgaagtcatgctgcttggtcacagcgaccactacgagccagac
agtggcatgcaggtaaccattgctttcaatcactttggagagaaattgattcaaaggatg
ccaaggtgtagacgtggatacattcatgtggttaacaatgattttactcaatgggaaatg
tatgcgattggcggtagcggtaacccgacaattaatagtcagggtaaccgctttactgcc
ccatccaacccgtttgccaaagaggtgactaaaagagttgaaacgccggacggtgagtgg
aaagggtggaactggcgatctgagggagacattttggttaatggagccttcttcgtggcg
tctggagaaggtgcagaaatgaggtacgagaaggcgtatagcgtcgagcctaaatcggcc
tcgttcatcgaccaaatcacatttcattcaggcgttcttggagttggcggcaggaacaac
aatctggggatgtggactactaccggatccgaaggtaatggcggtttagattcttataat
gactatacggatgaaatgtctggcaccggttcaactaaccggttatctttttcggttata
gttttatctttcatgctcaatttgttatcatatttggtcattttcacttcttcaacccaa
atgttttctttccaacccaaatgttcatga
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