KEGG   Brassica oleracea (wild cabbage): 106300297
Entry
106300297         CDS       T04124                                 
Name
(RefSeq) probable pectate lyase 12
  KO
K01728  pectate lyase [EC:4.2.2.2]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe00040  Pentose and glucuronate interconversions
boe01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:boe00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00040 Pentose and glucuronate interconversions
    106300297
Enzymes [BR:boe01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.2  Acting on polysaccharides
    4.2.2.2  pectate lyase
     106300297
SSDB
Motif
Pfam: Pectate_lyase_4 Beta_helix
Other DBs
NCBI-GeneID: 106300297
NCBI-ProteinID: XP_013591861
LinkDB
Position
C6:18545899..18549680
AA seq 489 aa
MMLQRSCIVLFSLSLFVPYMSLAMLNKTLLLLPHPDPELVALDVHRRVNASLWRRQAMDT
TDQTGSNPCFTGNPIDDCWKCDPNWPNNRQGLADCGIGFGQYALGGKGGRFYFVTDSSDD
DAVEPKPGTLRYGVIQVEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCIT
LQYVSNVIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIFGSKDIWIDHCSLSR
CKDGLIDAVMGSTGITISNSFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLIQRM
PRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRFTAPSNPFAKEVTKRVETPDGEW
KGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFIDQITFHSGVLGVGGRNN
NLGMWTTTGSEGNGGLDSYNDYTDEMSGTGSTNRLSFSVIVLSFMLNLLSYLVIFTSSTQ
MFSFQPKCS
NT seq 1470 nt   +upstreamnt  +downstreamnt
atgatgcttcaaagaagctgcattgtactcttctctctttctctgttcgttccatacatg
agtttggccatgctcaacaaaactcttcttctcctaccgcatcccgacccagagctagtc
gctcttgatgttcataggagagttaatgcctctctgtggagacgtcaagctatggacacg
acggaccaaaccggttcaaacccgtgcttcaccggaaatccaatcgacgactgttggaaa
tgcgacccgaactggcccaataaccgacaagggctagccgattgcggaatcgggttcgga
cagtacgcattgggaggcaaaggcggtcggttttacttcgtcactgattcttccgacgac
gatgctgtcgagcctaaaccgggcactctcagatacggagtgatacaagtagagccattg
tggatagtgttcccaagcaacatgatgataaaattaaagcaagagttaatattcaatagt
tacaagactcttgatggaagaggggctaatgttcatattgttggtggtggctgcatcact
cttcaatatgtctccaatgttatcattcacaacattcatatccaccattgctaccagtcc
ggtaatactaacgtgcggtcaagtccaacgcattatggattcagaactaaatcggacggt
gatggtatctccatcttcggatcaaaggacatatggatcgaccattgttctctctcaaga
tgtaaagatggtctgatagatgctgtgatgggatctaccgggattacaatatcgaacagc
ttcttctcacaccacaatgaagtcatgctgcttggtcacagcgaccactacgagccagac
agtggcatgcaggtaaccattgctttcaatcactttggagagaaattgattcaaaggatg
ccaaggtgtagacgtggatacattcatgtggttaacaatgattttactcaatgggaaatg
tatgcgattggcggtagcggtaacccgacaattaatagtcagggtaaccgctttactgcc
ccatccaacccgtttgccaaagaggtgactaaaagagttgaaacgccggacggtgagtgg
aaagggtggaactggcgatctgagggagacattttggttaatggagccttcttcgtggcg
tctggagaaggtgcagaaatgaggtacgagaaggcgtatagcgtcgagcctaaatcggcc
tcgttcatcgaccaaatcacatttcattcaggcgttcttggagttggcggcaggaacaac
aatctggggatgtggactactaccggatccgaaggtaatggcggtttagattcttataat
gactatacggatgaaatgtctggcaccggttcaactaaccggttatctttttcggttata
gttttatctttcatgctcaatttgttatcatatttggtcattttcacttcttcaacccaa
atgttttctttccaacccaaatgttcatga

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