KEGG   Brassica oleracea (wild cabbage): 106303484
Entry
106303484         CDS       T04124                                 
Name
(RefSeq) coatomer subunit alpha-1-like
  KO
K05236  coatomer subunit alpha
Organism
boe  Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:boe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:boe04131]
    106303484
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:boe04147]
    106303484
Membrane trafficking [BR:boe04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    106303484
Exosome [BR:boe04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   106303484
  Exosomal proteins of bladder cancer cells
   106303484
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd WD40 WD40_Prp19 WD40_WDHD1_1st TPR_COPA_B WD40_CDC20-Fz WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_SCAP WD40_RFWD3 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_IFT122_1st NBCH_WD40 ENTH
Other DBs
NCBI-GeneID: 106303484
NCBI-ProteinID: XP_013595194
LinkDB
Position
C7:complement(47927733..47932064)
AA seq 975 aa
MLTKFETKSNRVKGLTFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFH
NSQPLFVSGGDDYKIKVWNHKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGSLKKKTVSPADDLMR
FTQMNSDLFGGVDAIVKYVLEGHDRGVNAIFYAGTGNLLCRSEDKVVIFDLQQRLVLGEL
QTPFVRYVVWSNDMDNVALLSKHTIIIASKKLVLQCTLHETIRVKSGAWDDNGVFIYTTL
NHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAITINATEYIFKLALLRK
RYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALHFVEDERVRFNLALESGNISVAVASAT
EINEKEQWYRLGVEALRQGNAGIVEFAYQQTKNFERLSFLYLITGKLDKLSKLMKIAEVK
NNVMGQFHNALYLGDVKERVKILENAGHLPLAYITASVHGLTDTAERLATELGDNVPSLP
EGKTPSLLMPPSPVMCGGDWPLLRVMKGIFEGGLESAARGGAVDEDEEDAGGDWGEGLDM
VDVDGMENRDIEAILAEAEGAEEDNDEEGGWGELEGLDLPPELDTPKASANARSSVFVTP
TQGMPVSHIWSQKSSLAAEQAAAGSFDTAMRLLNRQLGIRNFAPLKSMFIDLFSGSHSYL
RAFSSSPVVPLAIERGWSESNSPNVRGPPALVYDFSQQEEKLKSGYKATTSGKDEKLTEA
LRLFLSILHTIPLVVVESRSEVDEVKELVSIAKEYVLGLKMELKRRQKKDDPVRQQELAA
YFTHCNLQLPHLRLALLNAMTVCYKAKNLATAYNFAKRLLETNPLESHARAARQIVQAAE
RNMTDTTELNYDFRNPFVICGSTYVPIYRGQKDVSCPYCTARFVPSQQGNICGVCDLAVI
GAAASGLICSPSQVR
NT seq 2928 nt   +upstreamnt  +downstreamnt
atgttgacgaaatttgagacgaagagtaacagagttaagggcctcaccttccaccctaag
cgaccatggatcctcgccagtttgcacagtggtgtgatccagctctgggattatcgtatg
ggtactttgatcgatcggttcgacgagcacgaaggtcctgttcgtggtgttcactttcac
aattctcagcctctattcgtctccggaggtgatgattacaagattaaagtttggaaccac
aaaacgcacaggtgcctcttcacccttctcggccatctcgactatatccgcactgtccaa
tttcaccacgagaacccgtggattgtgagtgctagtgacgatcagactatccgcatatgg
aactggcagtcacggacttgtatctctgtgttgactggccacaatcattatgtcatgtgt
gcttctttccatcctaaagaagacctggtcgtgtcagcatctttggatcagactgtccgt
gtctgggatattggttctcttaagaagaagacagtatctcctgctgatgacctcatgcga
tttacgcagatgaactctgatctttttggtggtgttgacgctattgttaagtatgtcctc
gaaggtcatgatagaggagtaaatgctatcttttatgctgggactggaaatttgctttgt
agatcagaggataaagtggtaatatttgaccttcagcaaaggcttgttcttggtgaactt
cagacaccgtttgttaggtatgttgtttggtccaatgatatggataatgttgctttgctc
agcaaacacactatcattattgcgagcaaaaaacttgtcctgcagtgcacacttcatgag
acaatacgtgtgaagagtggagcttgggatgacaatggtgtcttcatctacacaactttg
aaccatatcaagtattgtcttcctaatggagatagcgggatcatccgaaccctggatgtg
cctatctatatcaccaaggtttctggaaacacaatcttttgcttggaccgggatgggaaa
aacagggcaatcaccatcaatgcaactgaatacattttcaagcttgcactgctgagaaag
agatatgatcatgtcatgagcatgataaagaactcccagctctgtggacaggctatgatt
gcttacctgcagcagaaaggattccctgaagttgccctccattttgttgaagacgagaga
gtccgattcaacctggctcttgaaagtggcaacatcagcgtcgctgtggcgtccgctaca
gagattaatgagaaagagcagtggtatagacttggagtggaggctcttcgccaaggtaat
gctggaattgttgaatttgcgtaccagcaaacgaagaactttgagaggttatcttttctt
tacctcattactggtaagttggacaagctttcaaagttgatgaagattgcagaagtgaag
aacaacgtgatgggtcagtttcacaatgctctctacctaggagatgttaaagagcgtgtc
aagatacttgagaatgctggtcatttacctctcgcttatatcactgcttcggttcatggt
ttaacggacactgctgagcgacttgcgactgagctaggagacaacgtgccctcgttacct
gaggggaaaactccgtcgcttttaatgccaccatctcccgtcatgtgtggtggtgattgg
cctcttctaagagtgatgaagggaatatttgaaggcggacttgagagtgcagccagagga
ggggctgttgatgaagatgaagaagatgctggtggtgattggggtgagggacttgacatg
gtcgatgttgatggaatggagaacagagacatcgaagccattttggcggaagctgaagga
gcggaagaagataatgatgaagaaggtggatggggtgaacttgagggcttggacctccca
ccagagcttgacactcctaaggcctctgctaacgcacgttcatccgtcttcgtgacacct
actcaaggtatgcccgtaagccatatttggagccagaaatcatcacttgctgctgagcaa
gctgcagctggaagcttcgacactgcaatgcgtctgctcaacagacagcttggcataagg
aactttgcccctttgaaatcgatgtttattgatttgttcagtggcagccatagctacctg
cgtgctttttcttcatctcctgtggttccacttgccattgaacgtggatggagcgagtca
aacagtcccaacgtccgtggcccaccagctcttgtttatgatttctctcagcaagaagag
aagctcaagtccggctacaaagccacaacaagtgggaaagatgagaaattgactgaggct
ctccggctcttcctctctatcctccacaccatccctctagtggtggtcgagtcaagaagt
gaagtagatgaggttaaggaactggtcagtatcgctaaagaatatgtcctcggtcttaaa
atggagctcaagagaagacagaagaaagatgatccagtgaggcagcaggagcttgctgct
tacttcactcactgcaacctccaactacctcacttacgactcgcgctgttaaatgcaatg
accgtctgctacaaggccaagaatctcgccactgcctataacttcgctaaaagattgctg
gaaaccaacccattggagagccatgccagagcggctagacaaatcgttcaagccgctgaa
cgcaatatgactgatacaaccgagctcaattacgacttcagaaacccgttcgtgatatgt
gggtcaacctatgttccaatctacagaggtcagaaagacgtgtcctgtccatactgcacc
gccaggtttgttccaagccagcaaggaaacatatgcggggtctgtgatcttgcagtcatt
ggcgcagccgcatctggtttgatatgctcgccgtctcaggtccggtga

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