KEGG   Brassica oleracea (wild cabbage): 106303639
Entry
106303639         CDS       T04124                                 
Name
(RefSeq) replication factor C subunit 3-like
  KO
K10756  replication factor C subunit 3/5
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03030  DNA replication
boe03410  Base excision repair
boe03420  Nucleotide excision repair
boe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106303639
   03410 Base excision repair
    106303639
   03420 Nucleotide excision repair
    106303639
   03430 Mismatch repair
    106303639
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:boe03032]
    106303639
   03036 Chromosome and associated proteins [BR:boe03036]
    106303639
   03400 DNA repair and recombination proteins [BR:boe03400]
    106303639
DNA replication proteins [BR:boe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    106303639
  DNA Replication Termination Factors
   ELG1-RFC complex
    106303639
Chromosome and associated proteins [BR:boe03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    106303639
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     106303639
  Check point factors
   HRAD17(Rad24)-RFC complex
    106303639
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_lid_RFC1 AAA_22 DUF815 AAA_5 RuvB_N nSTAND6 ABC_tran Mg_chelatase AAA_29 AAA_23 RsgA_GTPase AAA_2 AAA_16 AAA_24 T2SSE nSTAND3 ATPase_2 NB-ARC TsaE FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 106303639
NCBI-ProteinID: XP_013595388
UniProt: A0A0D3DCH4
LinkDB
Position
C7:36214149..36217415
AA seq 354 aa
MLWVDKYRPKSLDKVIVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLKQIYG
ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR
CLNVRINAPSQEEIVKVLEFVAKKESLQLPHGFAARIAEKSNRSLRRAILSLETCRVQNY
PFTDNQAISPMDWEEYVAEISTDMLREQSPKSLFQVRGKVYELLVNCIPPEVLLKRLLYE
LLRKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtcgacaagtataggccgaaatcgctcgataaggttatcgttcatgaggat
atcgctcaaaatctcaagaaattggttacggagcaagattgtccgcatttgctcttctat
gggccgtcaggttcgggtaagaaaaccctaatcatggcgcttctcaagcagatatatggt
gccagtgctgagaaggtgaaagtggagaatagggcatggaaagttgatgctgggagtaga
actattgatctggagctcactacactatcaagcaccaatcatgtggaacttactccaagt
gatgcaggctttcaggacagatacatcgttcaagagatcattaaagaaatggccaagaac
agaccaattgacaccaaaggaaagaagggctacaaggtgttggtactaaatgaagttgac
aagctctcacgagaagcacaacattctctgcggagaacaatggagaaatatagctcatct
tgccgtctcatcttatgctgtaacagttcttcaaaggttacagaagccatcaagtctcgt
tgtctcaatgtgcggattaatgcaccttcgcaggaagagatagtgaaagtgttggagttc
gttgcaaagaaagaaagcctgcaactaccccatggttttgctgctcgtattgccgagaaa
tcaaatcgcagtcttagaagagctattctgtcacttgagacttgtcgtgtccaaaactat
ccgttcacagataaccaagcgatatctcccatggattgggaagagtatgttgctgaaata
tcaactgacatgctgagggaacagagtcctaaaagtttgtttcaggtgcgcgggaaagta
tacgagctgctggttaattgcattccaccagaagtcttactgaagaggcttctttacgaa
ttgctgaggaaactggactcggagctgaagcttgaagtctgccactgggccgcatattat
gaacatcggatgaggttaggtcagaaagccatatttcacatagaagcatttgtggccaag
tttatgagcatatacaagaacttcctcatctcaacatttgggtag

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