Brassica oleracea (wild cabbage): 106303709
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Entry
106303709 CDS
T04124
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like
KO
K12897
transformer-2 protein
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106303709
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
boe01009
]
106303709
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106303709
Protein phosphatases and associated proteins [BR:
boe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106303709
Spliceosome [BR:
boe03041
]
Common components
Common spliceosomal components
SR proteins
106303709
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_DEAH11
MAX_effector
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
106303709
NCBI-ProteinID:
XP_013595465
LinkDB
All DBs
Position
C7:4805657..4808271
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AA seq
231 aa
AA seq
DB search
MPDSPRMRDSQSPSPLRELSRSWSRSRSRSGSRPRSSSVPRHRSRSRSRGRSRSRERGHR
RTETANPGNTLYVTGLSTRVTEREIETHFSKEGKVASCFLVVEPRTRASRGFAFVTMDSY
EDADRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKNDRDHGGRDRDRGSHYGR
DDYGDRRSARRPPLRGRRDYSPPPRRERSRRDRSYSPYGSPERRRHHRGSR
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atgccggattctccgagaatgagagattcacaatctccttcacccctgagagaactgtcc
aggtcttggtccagatcaagatcaagatctgggtccagacctaggtcgagttctgtccca
aggcatagatcaagatcaagaagccgcggaaggtcgaggtcgagggagaggggccatcga
aggactgaaactgcaaaccctgggaatactctttacgtgacgggcttatctacaagggtc
acagagagggagattgaaacccatttctccaaggaggggaaggttgcctcctgctttctt
gtggtggagccccggactcgtgcttctcgtggttttgcctttgttacaatggatagctac
gaagatgctgaccgctgcattaagtacctgaaccagtctgttctggagggccgttacatt
actgttgaaaggtcaaggaggaagcgtccaagaactcccactccagggcactatcttggt
ctgaaaaacgacagggatcatgggggtcgtgaccgagaccgtggtagtcactatgggcgt
gatgattatggagaccgtaggtcagcaagacgaccacctttgagaggaaggcgtgactat
tctccgccacctcgcagggaaaggtcgaggagagataggtcttactctccttatgggagt
ccagaaaggaggagacaccaccgtggctcaaggtga
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