Brassica oleracea (wild cabbage): 106304149
Help
Entry
106304149 CDS
T04124
Name
(RefSeq) probable pectate lyase 6
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106304149
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106304149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
106304149
NCBI-ProteinID:
XP_013596000
UniProt:
A0A0D3DAE6
LinkDB
All DBs
Position
C7:30832892..30834850
Genome browser
AA seq
459 aa
AA seq
DB search
MASAHLNIGSYVFAFASLFVAIVAPSVQGHVAVYDEYWTQRQTDALRQTIKSYDPNPFNV
TDHFNYHAALAMETTGADNGTRRELRQVRRGRRTKRRGGRHHSLNAIDKCWRGDKNWHKN
RKKLADCVLGFGRRTTGGKKGQFYVVTDASDHDLVNPKPGTLRHAVTRDRPLWIIFGRSM
IIKLQQELIITHDKTIDGRGENVHIMGGAGLTLQFVKNVIIHNIHIKHIKCGAGGMIRDC
EHHVGQRSKSDGDGINIFGATNIWIDHVSMTHCSDGMIDAIMGSTAITISNSHLTDHNEV
LLFGGKDGDVIDKKMQITVAFNHFGKRLVQRMPRVRYGLVHVVNNDYTHWEMYAIGGNKN
PTIISQGNRFIAPHKETCKQVTKREYTPYTEWKSWNWQSERDYFLNGAYFVNSGRANAWS
PAPKNPIHRKFAIRPQSGTGVRRLTKDAGTLGCRPGKSC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgctcatttgaatattgggagctatgtcttcgcctttgcctcgttatttgta
gccatcgtggctccatcggttcaaggtcacgtcgcggtatacgatgaatactggacccag
cgccaaaccgacgcattgcgacaaactataaaatcttatgaccctaatccatttaacgtc
acggaccactttaactaccatgccgcattagcaatggagacgactggtgcagacaacgga
acaaggagagagcttcgacaagttagacgcggtcggagaacaaagagacgtggcggaagg
caccactcccttaacgctatcgataaatgctggcgaggagacaaaaactggcacaagaac
cggaaaaagctagcggactgcgtcctaggatttggtcggagaacaaccggaggcaaaaag
ggacagttctacgtagtcaccgacgcatccgaccacgatctcgtcaatcccaagccagga
actctacgacacgcagtgactcgcgacagaccgctatggatcatattcggtagatccatg
atcataaaactgcagcaagaactgatcataacacacgataaaactattgacggtcgagga
gagaatgtacatataatgggaggtgcaggtttaacgttacagttcgtgaagaatgtgatc
atacacaatattcatatcaaacacattaaatgtggggctggtgggatgatcagagactgt
gaacatcatgttgggcagcgttcaaagagtgatggtgatggtatcaatattttcggagcc
acgaatatttggatcgatcatgtctccatgactcattgttctgatgggatgatcgatgcc
attatgggatcgaccgccattactatctccaactcccatttaaccgaccataacgaggtg
ctgttgtttgggggtaaagacggggatgtgatcgacaagaaaatgcagataacggttgcg
tttaaccattttgggaagagattggtccaaagaatgccaagggtcagatacggtttggtc
catgtagtgaacaatgactacactcactgggaaatgtatgctattggtgggaacaagaac
cctaccattataagtcaaggcaaccgtttcatcgctcctcataaagaaacttgcaagcag
gttacaaagagagagtatacaccttatacagagtggaagtcatggaactggcaatcagag
agagattacttcttgaacggagcttactttgtaaattcaggaagggcaaacgcgtggagc
cctgccccgaaaaacccaatccacagaaagtttgcgatccggcctcaatcaggaacaggt
gtaagaagactcactaaggatgctggtacgcttggttgcagaccaggcaagtcctgctga
DBGET
integrated database retrieval system