Brassica oleracea (wild cabbage): 106304336
Help
Entry
106304336 CDS
T04124
Name
(RefSeq) putative leucine-rich repeat-containing protein DDB_G0290503 isoform X1
KO
K08330
autophagy-related protein 11
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
106304336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
boe04131
]
106304336
03029 Mitochondrial biogenesis [BR:
boe03029
]
106304336
Membrane trafficking [BR:
boe04131
]
Autophagy
Cytoplasm to vacuolar targeting (CVT) pathway
Scaffold protein
106304336
Mitophagy
Scaffold proteins
106304336
Mitochondrial biogenesis [BR:
boe03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
106304336
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG17_like
ATG11
DUF8156
IKKbetaNEMObind
DUF3837
Motif
Other DBs
NCBI-GeneID:
106304336
NCBI-ProteinID:
XP_013596200
UniProt:
A0A0D3A313
LinkDB
All DBs
Position
C1:4311683..4316424
Genome browser
AA seq
1123 aa
AA seq
DB search
MSASFTCDDGKLILCVAENGHTFEFNCSETTPVESVMRFVESVSGISFSDQLLLSLDMKL
EPQKLLSAYGLPSSGREVFVFNKSMLQSSSHPPSPEDVDLQEVDDALPPAPVHELHPLDD
ALDPALKALPLYERQFRYHFHKGRAFYNCTVVRLESCERLTREQKVQQRAVEVATRNLEQ
YYRVIFQNFLEFMKRYKHQHRLHSDLLMNFGRDVEKLRSVKVHPCLQTDSRRCLLDFVKE
DNLKKAAESCGISHKQFENKIAQFQQMFVEVKRKVEELFACRDSLTTKSLEAAVKDHERF
INEQKSIMQSLSKDVDTVKKLVDDCMSSQSSSSLRPHDAVSALGPMYEVHDKNHLPKMQA
CYNSISELLDFCKSKKNEMNIFVHSYMQKITYVTYVIKDAKLQFPVFREAMVRQDELFAD
LKLVRGVGAAYRACLAEAVRRRSSMKLYMGMAGQLAEKLAMKRETEVRRREEFLKTHGPF
LPRDVLSSMGLYDTPTQCDVNVSPYDTSLINIEMADVDRYAPEYLVGLHSKVASSRSSLG
MSSDSSLSAEAEEISLDKDSFEDILEASELVEIAGTSKMEVENAKLKAELASAISRICSL
GPQVEYDVLEDGSEVENLLKNASEKTAEALQAKDEYEKHLLSMLKEKQRHCDSYEKRIRE
LEQRLNDEYLQGKRYVNSKDVSGLNLMEEKGNKAHVSGSEPMDEVSCVSNLSSKQPCKAR
EGMDENMVDSSQVLSHHPLDSSMLESQQNNEKGGKDNVFLSDSSTAESPTKSLGNNVVTN
IGLDTKHSDDFILELKSELMEKSDKLSETESKLNGAMEEVASLSRELEMNQKILEESQMN
CAHLENCLHEAREEAQTHLCAADRRASEYTALRASAVKMRGLFERFRSSVCAGGGVAGFA
DSLRTLAQALDNSINDNEDDGTVEFRKCIRVLADKVSYLSQNREELFEKCRNLEATSEQT
IKDLKEKRELVKTLYTKHQLGKQANKEKISFGRLEVHEIAAFVLNQAGHYEAINRNCPNY
YLSSESEALFTDHLPIRPTYIVGQIVHIERQAVKQAQTLSASATPEAGKRDYLGSRNLAS
SSMSSTSSSGATTTNPYGLSSGCEYFIVTIAMLPDTAIHQQAS
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaagcttcacttgtgatgacgggaagctgattctctgcgtggcggagaacgga
catacatttgaattcaattgcagcgagacgactccagttgaatccgtgatgcgtttcgtt
gaatctgtctccgggattagcttctctgaccagcttctcctctcgctggacatgaaactc
gagcctcagaagctgctttctgcttacggacttccttcaagcggtcgagaagtgtttgtt
ttcaacaagtctatgcttcaaagcagctctcatcctccctcaccggaagatgtagattta
caggaggttgatgatgctttgcctcctgctccagtccatgagcttcatcccttggacgac
gcgttggatccggctctaaaggccttgcctttgtacgagaggcagtttcgttaccatttc
cataaaggccgagccttttataactgtacggttgtgaggcttgagagctgcgagaggctg
acgagagagcagaaggtgcagcagagagctgttgaagtcgctacgaggaacctggagcag
tattacagggtgatctttcagaactttctcgagttcatgaagcggtataagcatcagcac
cgcctccactctgacttgctgatgaatttcggaagggatgttgagaaactcaggtcggtt
aaggtccacccttgtctccaaaccgattcgaggagatgcttgttggactttgtcaaggaa
gataacctcaaaaaggctgcggagagttgcggaatctctcataagcagtttgagaataag
attgctcagttccagcagatgtttgtggaggtcaagcgcaaggttgaggagctgttcgct
tgcagagactccttaacgacgaagagcttagaagcggctgttaaggaccacgagcgattc
attaacgagcagaagagcataatgcagtctctcagcaaagatgtcgatacggttaagaag
cttgtggatgattgcatgtctagccaatcgtcctcatctctcagacctcatgacgctgtt
tcagcacttggtcctatgtacgaagtgcatgacaagaatcacctccccaagatgcaggct
tgttacaactccatttcggaactgcttgatttttgcaagagcaagaagaatgagatgaac
atctttgtgcacagctacatgcaaaagataacgtacgtcacatacgtcatcaaagatgcg
aagttgcagtttcctgttttcagagaggcgatggtgcgtcaggatgagttgttcgctgac
ctgaagctcgtccgtggtgttggcgccgcttatagggcctgcctcgcagaggctgtgagg
aggagatcctctatgaagctttacatgggcatggctgggcaattggcagagaagcttgct
atgaagagggaaacagaggtaaggagacgcgaggagtttctcaaaactcatggtcctttc
ttacctcgtgatgtgctgtcctcaatgggtttatatgatactcccactcagtgtgatgtt
aatgtatctccttatgatactagtttgatcaatattgaaatggcagacgttgatcgatat
gctcctgagtatctggttgggttacattcaaaggttgcgtcctcgaggagttcactgggg
atgtctagtgatagctctctttccgctgaggctgaggagataagtttagacaaagacagt
tttgaagatatcctagaggcttctgagttagtggagatagcagggaccagcaagatggaa
gttgagaacgcgaaactaaaagctgaactcgcttctgcgatctctcggatatgttcgtta
ggcccacaggttgaatacgatgtgctggaggatggaagtgaagtggaaaatttgttgaaa
aatgcctcagagaagacagcagaggcgctgcaggcgaaagacgagtatgagaaacatctc
ctgtccatgctcaaggagaaacaaaggcattgtgattcatatgagaagcgcatccgtgaa
ctggagcaacgtctcaatgatgagtatctacaaggaaagagatatgttaatagtaaggat
gtgtctggcttgaaccttatggaagaaaaaggcaacaaagctcatgtatctggttcagag
cccatggatgaggtctcatgtgtttcaaatctttctagcaagcagccatgtaaagctagg
gaaggtatggatgagaacatggtggattcctctcaggtgctcagtcatcatccgcttgat
tcatcgatgctggagagccagcaaaacaatgagaaaggcggaaaggataatgtgtttcta
agtgacagttcgactgccgagagcccaacaaaatcattgggtaataatgtggtaactaac
ataggtttagataccaaacacagtgatgattttatcttggaacttaaaagtgagctgatg
gagaagtccgataaactgagtgaaacagagtccaagctaaatggggcaatggaagaggta
gccagcctgagcagagagttggaaatgaatcagaaaattcttgaagaatctcagatgaat
tgtgcgcatttggagaactgcttacatgaagctagagaagaagcccagacccatctttgt
gctgctgatcgtagagcttctgagtacactgcactccgtgcatcagctgtgaagatgaga
ggtctctttgaaagattccggagctctgtgtgtgctggtggtggtgtcgctggttttgct
gactccttgcgtactttggctcaagctttagacaactccattaatgacaatgaggatgat
ggcactgttgagttccggaagtgcatccgagttctggcagacaaagttagctacctctcc
caaaaccgagaggagttatttgagaagtgccgaaaccttgaagctacaagtgaacagaca
ataaaggacttgaaggaaaagagagagctagtgaaaacattgtacactaagcaccaactt
gggaagcaggcgaataaggaaaagatatcatttggtcgtcttgaagtccatgagatagca
gcatttgtgctaaatcaagcagggcattacgaggcaatcaacagaaactgcccaaactac
tacttgtcctctgaatccgaggcattgttcacagatcacctcccgatccggcctacatac
atcgttggacagattgtccacatcgagcgccaagcagtgaagcaggcacagacactttca
gcgtctgcaactcctgaggctggtaagagagattatctcggctcaagaaacctggcatca
agttcaatgtcttcaacatcgtcttcaggagcaacgacaacaaacccttatggcctctca
tcaggatgtgaatacttcatagtgacaatagcaatgcttcctgacactgctattcatcaa
caagcttcctga
DBGET
integrated database retrieval system
