Brassica oleracea (wild cabbage): 106304380
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Entry
106304380 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit D
KO
K07466
replication factor A1
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03030
DNA replication
boe03420
Nucleotide excision repair
boe03430
Mismatch repair
boe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106304380
03420 Nucleotide excision repair
106304380
03430 Mismatch repair
106304380
03440 Homologous recombination
106304380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
boe03000
]
106304380
03032 DNA replication proteins [BR:
boe03032
]
106304380
03400 DNA repair and recombination proteins [BR:
boe03400
]
106304380
Transcription factors [BR:
boe03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
106304380
DNA replication proteins [BR:
boe03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
106304380
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
106304380
MMR (mismatch excision repair)
106304380
DSBR (double strand breaks repair)
HR (homologous recombination)
106304380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
106304380
NCBI-ProteinID:
XP_013596245
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Position
C7:complement(38424284..38427162)
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AA seq
611 aa
AA seq
DB search
MQTSVTPDAISAVLSNPSFDSSSSDRSEIVVQVVDLKPIGNRYTFSANDGKTRVKAMFTA
SLTPEIISGKIQNLGLIRLLDFTVNDISGKSTKYFLVTKCESVASALDSEVDLEGKSEEE
GGEAKRQKLDHSPMSDVFASQIITEQRGNAAPAARMSMTRRVHPLVSLNPYQGSWTIKVR
VTNKGVMRNYRNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDRFQLGKVYYISRGS
LKLANKQFKTVQNDYEMTLNENSEVEEASDGEMFVPETKFKFVPIEELGMYVNQKELIDL
IGVVQSVSPTMSIRRRTDNEMIPKRDITLADESKKTVVVSLWNNLATGIGQELLDMADKS
PVIAIKSLKVGDFQGVSLSTISGSNVVINPESPEAKKLKSWYDSEGKETSMSSIGSGMSP
SAKNGSWSMYADRVPLSQITSNPSLGEDKPVFFSTRGYISFIKPDQTMWYQGFKTCNKKV
TEAMDSGYWCESCQKKDEECRLRYIMVVKVSDSTGEAWFSSFNDEAEKIIGCSADELNKL
RSEGGEVNEFQTKLKEATWSSHAFRISVTXNEYNGEKRQRITVKAVAPVDFAAESRLLLQ
DISKKNTSASH
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcagacttcagtgaccccagatgctatctccgccgtgttgtcaaacccatctttcgat
tcgtcgtcttcagatcgatctgagatcgtcgttcaagtcgttgatctcaagcctatcggc
aatcgatacacattcagtgctaatgatgggaagacgagagtcaaagcaatgtttactgct
tcgctaacacctgagatcatttctgggaagatccagaatctgggtctgatccgtctcctt
gatttcactgttaacgacatctcaggcaaatcaaccaaatacttccttgtgacaaaatgt
gagtctgttgcttccgcgcttgattccgaggttgacttggagggtaaaagcgaagaggag
ggtggtgaggccaagaggcagaagctagatcactctcccatgagtgatgtttttgcttct
cagataatcactgaacagaggggaaatgctgcaccagctgcaagaatgtccatgaccaga
agagttcacccacttgtgtccttgaatccctatcaaggaagctggaccatcaaagtccga
gtcactaacaagggagtcatgagaaactacagaaacgctaggggagaaggatgtgtcttc
aatgttgaactaacagatgaagaaggaacacagattcaagccacgatgttcaatgatgct
gcacggaagttttatgacaggttccagctgggaaaggtgtattatatatcaagggggtca
cttaaacttgctaacaagcagttcaagacagttcagaatgattacgagatgacactgaat
gaaaattcagaggtggaagaagctagtgacggggaaatgttcgttcctgagactaaattc
aaatttgtacccattgaagagttgggtatgtatgtgaatcagaaggagcttattgatctt
attggagttgttcaaagtgtctcccctaccatgagtatcagaaggagaactgacaatgaa
atgatacccaagagggatataactttggctgatgagtcaaaaaagactgttgtggtgtca
ctgtggaacaacttggcaaccggcataggtcaagaactgctagacatggctgataagtct
cctgtgattgcaatcaagtctcttaaagttggagactttcaaggtgtttcgttgtccacc
atcagcggaagcaatgtagtgattaatcctgaatcaccagaagccaaaaagcttaaatct
tggtatgattctgaaggcaaggaaacatccatgtcttccattggctcagggatgagccca
tctgccaagaatggatcttggtctatgtatgctgatcgagtccctctctctcaaatcaca
agcaacccatctctaggcgaggacaagcctgtgtttttcagcactaggggttacataagc
ttcatcaaaccagaccagacaatgtggtatcaaggttttaagacttgtaacaagaaagta
actgaagcaatggactctggttactggtgcgaaagttgccagaaaaaagatgaagaatgc
agattaaggtacataatggtagtgaaagtctctgactcgacaggagaagcttggttttcc
tcattcaatgacgaagcagagaagattattggatgttcagctgatgagctcaacaaacta
agatcagagggaggtgaagtgaatgaatttcagacaaagctgaaagaagcaacatggtcc
tctcatgccttcaggatcagtgtcacttagaacgagtataacggtgagaagaggcagagg
ataactgttaaagcggtagctcctgttgattttgctgctgagtcaagattactgctccaa
gacatctccaagaagaacacatcagcttctcattag
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