Brassica oleracea (wild cabbage): 106305866
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Entry
106305866 CDS
T04124
Name
(RefSeq) U3 small nucleolar RNA-associated protein 20
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
boe03009
]
106305866
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
106305866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
OAM_alpha
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-GeneID:
106305866
NCBI-ProteinID:
XP_013597725
LinkDB
All DBs
Position
C7:45718179..45730764
Genome browser
AA seq
2643 aa
AA seq
DB search
MATPADARAVKSLNTSGGRKKFVFKNLAQKVNEIDISGFFKSLEKVKPEPSEGSSFFRDC
LVELRELNTAEDFISFYEEMLPFVQTLPLVIEQKEIIFTKLVSRLQMDARLSLDAILRLI
AALSRDLLEDFIPFLPRIVNSLVALLENGGKKDADIIKQIFSSWCEILMNLQKYLVRDIE
GILRDTLDLRYHPKDYINELMSESMSFLLRNARNEQLEKGINRILSEVADPAKQDGAVDL
LYYAMRGTSGSLHSKAGRVLSFLLKDSTLSFCDNSPQGAGTVVGVVSSTLERLCEDLEAD
KLNVMWKCLIQEINESIKNKNSVHLSRLLSVLTAAVRVQKGLKVHDYPSLIRLVGLIVST
FVASSETVVEGDNLSAVIDEVLQLMLCTINRVTDLETVASQWAPIFAVKRSSLLTFLEEL
LNKDQSVVKAFTNNILSAINNMIWESSEEVIPLLLTFCENQLTSHDRVTIVDQTFEKIHE
FLEENIKKVRQNIENTGLSQTDDAELASIWGVVNCYPYFKVDSSLLISFKDTLRQHLTVP
DANSSSAPELMWQSLLGAALSSCHKLPRRINHNDIEEALSMAKDYKSCVQVLTPVADFLD
SMHRLALGNDDRSKPQPELQEEKAKDAFGIFSENLRHPNKCIRLMTLRILCHFETFSSDS
SSEEHPPKKKMKTEETKKPLHERNVLELLRSIEEIVPTVNTEGELITMIHEIKRNLSAGL
VHAAYLQLVLNGLMGIFHISYTKLWGPASECLEVLLRNHTVTVWSDFVCYLDQCQLKSEK
LDNHSENPNHNLSERPTDLIGRFNLFLCPPSNSTTTATVATQLLQTLQKVPKVAQSHASE
ILPRLLKFLGYNIENPTSVGLFNAQVCKGDDWRNVLKQWLTLLKLMKNPKSFQFSEFLNN
VLQNRFLDDNDAELQTIVLECLLLWNDFLLPHREHLLKLIKPEELREELTTSNMSVDIEE
AHKSLLFSLEIRILAPKVRTLKNLASRKHTSINHRKAVLRFIAERDVDDLALFFVLLIKP
LNIISEETMDLFWSSGKASLDYFQKADFLKDFTGDTISTLSKNQKSGFLHVIQDILEVFD
ELRVRPFIDFLMGCVVRLMVNYEERNIASLTPRNDTAASSTPDNKENVSVHQDQAGTALK
QFKELRSLCLKIIAHVLDKYEDSDLGSEFWDLFFSAVNPLIKNFKQEGSSSEKTSSLFSC
FLSMSRNRNLVTLLCREESLIPDICSILTVTTASDAIKSSALKFIENLLCLDSELHEDDS
MIKGFLDPYIETLFSSLHSLFIGDINKRKSIKYHGEREIRILKLLSKHMGDQSCAMKYLE
VLLSFLDKNVKDSDIRREALLAIQDITSLLGTESVTKIINKVSPLLVDAEVDVRLCICDL
LESLAKIDFSLDDVAKRIRDMNSISVMEVDDLDYERIVNAYVEIDSDFFAKSSKQHTMII
LSQSLYNLSSESIMLRGSAHKLLSSFIEFSASILCQEASAHSGAGKEVKIADASWTGKHT
LSIVDFILKHIADAVSKGGNIVKEWILLIREMVTKLPDAGNLGAFRPLCSEDENIDFFKS
IIHIQSHRRAKAISRFAKVVGDSSLPEGVLRKLFVAVFFHMLLDGQDVKEKENNVRNACT
EALASVSAHMSWKSYYALLNRCFREMHNHTKKGKLLLRLICLILDKFHFTEDGGYRQEEI
EGIHKSLQTVFGKMQKLMDSESDNVNVNSSVAALKVLKLLPKDVMDDYLSPIIKRIATFT
KNRLESTRGEARSALVACLKELGLEYLQVVIKSLRDILKRGSELHVLGYTVHSILSKCLS
KPTCGKLDHCLDDLLAVVETDIFGVVAEQKDVDKFKSKMKETGKSMSFETLKLISENVTF
REHALKLLSPVTAQLRWHLTPKIKPDLVKMLQHIAVGIEGNPSVDQVDLFVFIYGCVDDG
INNRNGLGDQGSSPPSKKKRKSRDETVGLISGAMSCPHLITVFALDLLQNRLKKIKLHNT
DKELLGKLDSFIRLLTECLRSKYEEIVSSALRCFTSLIWFPLPSLMSGAEELKTSLLTIA
QSAVDSSSSLVRSCLKLLTTLLGNKNITLSQEQLKLVIRFPMFADLESDPSFVAFSLLKA
IVKRKLVVPEIYDVALQVSELLVKSQLDSIQKKCKEILLQFLVHYPLSEKRLQQHVEFLL
QNLRYEHPTGREAVLDMLYALILKFSDRGKESVLDSQWRTMLIKLAPCLGTDTNKQVLSR
IGSVITLLINCISEDQVGSVISVCLCWYKQQRVQAVAAQVLGFIIDAKRNQFQKHIHNTL
EDAKVIMESALSASSLHNVEEGVIPFWKEAYHSLIMIEKMVGQFPYLKLKKDLEDVWKMV
FKFLLHPHAWLRSKSCRLLNYYFKALARRKRAESQIVVSDSLLENPSSLFSVAVSLCSQL
KELPTTGDDIEDLLIENIVFAVSSLHSLIGHSVQATDDGFWSSLGEDEQVVFLKAFEVLD
SGKGRSTFLSLTSGKRTDNGEEEDAASGVRNVLIGSLLKRLGKVALDTESVQMKIVFNVY
KAFTSQMNQEECRLYAYKILLPLYKVCEGFTGKIISDESKQLAEEVRDSIRDNTLGNQLF
VEVYSEIRKSLRNKREKRKREEKTMAVVNPERNAKRKLRLASKNKANKRRRMTSMKLSRW
ARS
NT seq
7932 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccagctgatgctcgggcagtcaagtcgctcaacacttccgggggacgtaag
aaattcgtgttcaagaatctcgctcagaaagtcaatgagattgacatcagcggtttcttc
aagagcctggagaaggttaagcctgagccttcagagggctcctcgtttttcagagactgc
ctcgtcgaattgagggaactgaatacagcagaagatttcatctcgttttacgaggaaatg
ttgccatttgttcagactttgcctttggttattgagcaaaaagaaataatcttcaccaag
ctcgtctcgagattacaaatggacgcaagattgtccctggacgccattctcaggttgatt
gctgctttatcaagagatctcttggaggactttatccccttccttccacggatagtgaac
tccttagtggcactcctagaaaatggtggcaagaaagacgcggatattatcaagcagata
ttctcttcatggtgcgagatattaatgaatctgcagaagtatctagtacgcgacatcgaa
ggtattctcagggatacgttggacttgaggtatcatcccaaagactacatcaatgaatta
atgtcagagtctatgtcatttttgttgaggaatgcgcggaatgagcaacttgaaaaaggg
atcaacaggatcctttccgaagttgcagatccagccaaacaagatggagcagttgattta
ctttattatgctatgagaggaacctctggaagtctccattcaaaagccgggagagttctc
agtttcttgctgaaagattcaacattatctttttgtgataattctcctcaaggcgctggt
acagtcgtgggagttgttagttccactttggagagattatgcgaggatttggaagcagac
aaattaaatgtgatgtggaagtgcttgattcaagaaataaacgaatcgatcaaaaacaaa
aactctgttcatttaagccgactgttgagtgtgcttactgcagctgtcagggttcagaaa
ggtctcaaggttcatgattacccatctttgattcgacttgtgggcctcattgtgtcaact
tttgtggcttcctctgagaccgttgtagaaggggataacctatctgctgtcattgatgaa
gttctgcaactgatgttatgcacaataaacagagtcactgatttggaaactgttgcttcg
caatgggctcccatttttgccgtgaagcgttcaagtttgctgacttttctggaggagttg
ttgaacaaggatcaatcggtagtgaaagcctttacaaacaatatattaagtgcaatcaac
aatatgatttgggagtcttctgaggaagttattcctctgttactaacattttgcgagaac
caactaacaagtcacgacagagtgaccatcgtagatcaaacatttgagaaaattcatgag
tttctggaagaaaatatcaagaaggttcgacagaacatagagaacactggattatctcaa
actgatgatgccgagttggcttccatttggggagttgtcaactgttacccttatttcaaa
gtggattcgtcattactgatttcctttaaggatactctcagacagcatttgacagtgccg
gatgcaaactcgtctagtgccccagaattgatgtggcagagcttacttggtgctgctttg
agttcatgtcacaaactgccgagaagaatcaaccacaacgatatagaggaagcattgtct
atggctaaagattacaagtcatgcgtacaagtgttgacccccgtggccgattttttggac
tcaatgcacaggcttgcgttaggtaatgatgacaggtctaagccacaaccagaacttcaa
gaagaaaaggctaaagatgcttttggcatattttcggaaaatttgcgccacccaaacaaa
tgcatccgtcttatgacgctgaggattttgtgccattttgaaacattttcgtccgactct
tcttctgaagagcatcctcccaagaagaaaatgaaaactgaggagaccaaaaaacccctt
catgaaaggaatgttcttgagttattacgctcaatcgaagagattgttcccacagtgaat
acggagggggagttgatcactatgattcatgaaataaaaaggaatctctctgctggcttg
gtacatgcggcatatttgcagctagtattgaatgggctgatgggaatatttcatattagt
tatactaagctgtggggtccagcatctgagtgtcttgaggttcttctgaggaatcacaca
gtaactgtatggagtgattttgtttgctatttggaccagtgccagctaaaatctgagaaa
ctcgacaatcatagtgagaatccgaaccacaacttgtcagagaggcctactgatctgatt
ggccgttttaatttatttctctgtccgccgtctaatagcacaactactgcaacggtggct
acgcagttgctccagaccttgcagaaagttcccaaagttgctcagtcccacgcttctgag
attctccctcggttgctgaagtttctgggatacaacattgaaaatcctacgagtgtcgga
ttattcaatgcgcaagtttgtaaaggagatgattggaggaatgttcttaaacagtggttg
actttgctgaaattgatgaaaaaccctaagtcgtttcagttcagcgaatttctaaacaac
gttctgcagaatagattcctggacgataatgatgctgaactacaaaccattgttctagag
tgccttctgttgtggaacgacttcttactcccacaccgcgagcatttgttgaaactgatc
aaaccagaggaattaagagaagaactcacaacctcgaacatgtccgtagacattgaagaa
gctcacaaatctcttcttttctctcttgaaattcgcatccttgcgccaaaagtcaggaca
ttaaagaatttggcttcacggaagcatacaagtataaatcaccggaaggcagttcttcgc
tttatagctgagcgggatgttgatgaccttgccctcttttttgtattgttgataaagcct
ttgaacatcatatcagaggaaacaatggacttgttctggagttcaggcaaagcttcgctg
gattatttccaaaaggcggatttcttgaaggatttcactggtgatactatttctacatta
tccaagaatcagaaatctgggtttcttcatgtcatccaagacatccttgaagtctttgat
gagctccgtgtccgaccttttatagactttttgatgggatgtgttgtccggctaatggta
aactatgaagaaagaaacattgcatcattgacaccaagaaatgacactgccgcctcatca
accccagacaataaagagaatgtttcagttcatcaagaccaggctggcactgctttgaag
cagtttaaagagttgagatcattatgtctgaaaattattgctcatgttcttgataaatac
gaggattctgatcttggttccgagttctgggacctcttcttttcggcagtaaatccgtta
attaaaaatttcaagcaggagggttctagtagtgagaaaacaagttccttgttctcatgc
ttcttgtcaatgagtagaaaccgcaatctcgtgaccctcttatgtcgggaagagtctctt
attccagacatttgttcgattctgacagtcaccacggcttcagacgctataaagtcgtct
gcactcaagttcatagagaatctgctttgtcttgacagtgagttgcatgaggatgacagt
atgatcaaaggcttcttagatccgtacatagaaacactgttcagcagcttgcattctctt
ttcattggggatattaacaaaaggaaatcaatcaagtatcatggggaaagagagattagg
attcttaaattgttgtcaaagcacatgggagatcagtcttgtgctatgaagtatttggaa
gtcttactttctttcttggataaaaacgtgaaagattctgatatccgtcgtgaggctttg
ctagccattcaggacatcacatcgttgcttgggactgagagtgtcaccaaaattataaac
aaagtctctcctctacttgttgacgctgaagttgacgttagattatgcatttgtgatctt
cttgaatctcttgcaaaaatcgacttttctctggatgatgtggcaaagcgcatccgagat
atgaattccatctcagtcatggaagttgatgatcttgactatgaaaggatagttaatgct
tatgtggagattgactcggatttctttgctaaatcctcgaagcagcacacgatgattata
ctgtcacaaagtttatacaacttatcatcggaatccattatgttaaggggaagcgcacat
aagctcttgtcatctttcattgaattttcggcctcaatactatgccaagaagcttcagct
cactctggcgctggcaaagaggtcaaaatagctgatgcaagctggacaggaaagcataca
ctgtccattgtggattttatcttgaaacacattgctgatgcagtaagcaaaggaggcaat
atagtaaaggagtggattcttttgatacgtgaaatggtgacaaaactcccggatgccgga
aatcttggtgcatttagacctttatgctctgaagatgagaatattgatttttttaaatct
attattcacattcagtcacaccgtagagcaaaggcgatttcacgtttcgcaaaagtggtc
ggagatagcagcctgcctgagggagtcttgagaaaactgtttgtcgctgtctttttccac
atgttgctcgatggacaagatgtaaaagaaaaagagaacaatgtccgtaatgcatgcaca
gaggcccttgcatctgtatcggcacatatgagttggaagtcgtactatgctctattgaat
cggtgtttccgtgagatgcacaatcataccaaaaagggaaagcttctgctgcggcttatc
tgcttgattttggataaatttcattttacagaagatggtggttacaggcaagaggagatt
gaggggattcataaaagccttcaaactgtgtttggaaagatgcagaagctgatggattct
gagtctgacaatgttaatgttaacagcagtgtggctgcgctgaaggttctaaagctgctt
cccaaagacgtaatggacgattatctgtcccctataattaagaggattgccacttttacg
aagaaccggttggagagcacacgtggtgaagccagatctgctctggttgcttgtttgaag
gaattggggctcgagtacttgcaggttgtcatcaaaagtttacgtgatatcctgaaacga
ggatctgagttgcacgtgctgggatacaccgtccattctatcttatcgaagtgcttgtcc
aaacctacgtgtgggaagttggatcattgtttggatgatctccttgctgtggttgaaacc
gatatctttggagtggttgctgaacagaaagatgtggataaattcaaatccaaaatgaaa
gagacaggaaaaagcatgtcattcgagactctgaagttgatttctgaaaatgtaacgttc
agagaacatgcattgaaattactgtctccggtcactgctcagctgcggtggcatctaact
ccaaagataaaaccagatctggtgaagatgttacaacacattgcagttggtattgaaggc
aatccatctgttgaccaagtagatctttttgtttttatatatggttgtgttgatgatggc
attaacaacagaaatggtcttggagatcaagggtcttctcccccatccaaaaagaaaagg
aaatcaagagatgagactgttgggttgatttctggtgctatgtcttgtccacatcttata
acagtgtttgctctggacttactgcaaaacagactgaagaaaattaaactccacaacact
gataaagagctgctggggaagttagattcgtttattagactacttactgaatgcttgcgt
tctaagtatgaagagattgtctcatcagcccttagatgtttcacttcgttaatatggttt
ccactgccttccctcatgtctggagcagaagagttgaaaacatcattgttgacaattgct
cagtctgcagtggattccagcagttctcttgtgcggtcatgccttaagcttttaacaacg
ctcctcggtaataaaaacataactttgtcacaggagcagttaaagttggtgattcggttc
cccatgtttgctgatctggagtccgatccatcctttgttgccttttcactcctcaaggcc
attgtgaaacgaaaacttgtggttccagagatttatgacgttgcacttcaggtttcagag
ttgttggtaaaaagtcagctggactcaatccaaaagaaatgcaaagagatactgttacag
tttttggtccactacccactttctgagaaacgtttacagcaacatgtggaatttctgctg
caaaatctgaggtatgaacatccaactggaagagaagcagtccttgacatgctttatgct
cttatcttgaaattctcagatcgcggcaaggagtcagttcttgacagccagtggagaaca
atgcttattaagcttgctccgtgtttgggcaccgatactaataaacaagtgctttcccgg
atcggttctgtgataacacttctgataaattgcatcagtgaagatcaagttggttccgtt
atctcggtttgtctgtgttggtataagcagcagagggtacaggctgtcgcagcacaggtg
ttgggatttataattgacgctaagaggaatcaatttcaaaagcatatccacaatacattg
gaggatgccaaagtgataatggagtctgctctcagtgcttccagcctgcataatgttgag
gaaggcgttattccgttctggaaggaagcataccactccctgattatgatagagaagatg
gtcgggcaatttccttatttaaaactcaaaaaagatttagaggatgtttggaaaatggta
tttaagttcttgttgcacccacacgcatggttaagaagtaaatcctgccggctactgaat
tattatttcaaggcattggctaggaggaaaagagcagaatctcagatagtagtatctgat
tctcttcttgagaacccaagtagcctgttctcggttgctgtttctctttgctcccagtta
aaggagctacccaccacaggggatgacattgaagatctcctcatagaaaatattgttttt
gcggtctcgagtcttcattccctgattggacattctgttcaagcaacagacgatgggttc
tggtccagtcttggcgaggacgagcaagtggtattcctaaaagcctttgaagtgcttgat
tcgggtaagggaaggtctacgtttctgtctcttacctcaggcaaacgtactgataacggc
gaggaggaggatgctgcgagtggtgtaaggaatgtattgattggaagcttgctcaagagg
ctcgggaaggttgctcttgatacggagtctgttcagatgaagattgtgttcaacgtctac
aaagcattcacctcacagatgaatcaagaagaatgtcgtttatatgcgtacaaaattctg
cttccattgtacaaagtctgcgaaggtttcacaggaaagatcatctcagatgagtctaaa
caactagcagaggaggtacgagacagtataagagacaatactttaggcaaccaactgttt
gtggaggtttacagtgagataaggaaaagtctgagaaacaagagggagaagagaaagaga
gaagaaaagacaatggcagtggtgaatccggagagaaatgcaaagaggaaactgaggtta
gcttcaaagaataaggcaaacaagaggaggaggatgacaagcatgaagttatctagatgg
gctcgctcttga
DBGET
integrated database retrieval system
