KEGG   Brassica oleracea (wild cabbage): 106306190
Entry
106306190         CDS       T04124                                 
Name
(RefSeq) bromodomain and WD repeat-containing protein 1-like isoform X1
  KO
K11797  PH-interacting protein
Organism
boe  Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:boe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:boe04121]
    106306190
Ubiquitin system [BR:boe04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     106306190
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_WDR75_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_SCAP WDR55 WD40_MABP1-WDR62_2nd Bromodomain WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_HPS5 Auxin_resp Beta-prop_WDR35_TULP_N VPS8_N Agenet Beta-prop_IP5PC_F WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 106306190
NCBI-ProteinID: XP_013598162
UniProt: A0A0D3DC72
LinkDB
Position
C7:complement(35452633..35462113)
AA seq 1683 aa
MALRKITPKADSVSPPMKPLSLSKQLPGNVQMADPDIAQNVVPNIDLDMREVYFLMLHLL
SSGPCQRTYALLRHELLEHELLPRRYHAWYSRSGLPSGDENDDGDSFPLNYAELVKRYSH
VKKDHLVELLKQLVFVSSRPTPSRGLGDGNGNKLIAAGVPTLLGTGSFSLLSYDKDIVGS
DLKPPPISMRWPHMRADQVRGLSLREIGGGFARHHRAPSIRAACYVIAKPSTMVQKMQNI
KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKVWSMETAYCLTSCRGHEGDITDLAVSSN
NTFIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRI
WDARGAQFAPRIYLPRPPSPDGKNNVPSSSNAQQSHQIFCCAFNANGSVFVTGSSDTLAR
VYSVWSANKINNDDHQPNHEMDVLAGHENDVNYVQFSGCAAGYKFAVTDYSKDDSVPKFK
NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQR
ILPTPRGVNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNP
RIAMSAGYDGQTIVWDIWEGIPIETYKISHFKLVDGKFSPDGTSIILSDDVGQLYVLSTG
QGDSQKDAKYDQFFLGDYRPLIHDLYGNVLDQESQLPPYRRNMEDPLCDSAMIPYEEPYQ
TMFQKRRLGALGKEWRPSALKLAVGPDITLDQDYQMPPLADLDLAEPLPEFVDVMEWEPE
VDILSDENDSEYNVPEEYSSEKEQECLNSSTSGESGSSSSESDEDGDNQNSLRRSKRKRH
KTGAGIMTSSGRRVKKKNVDELEGATNKNKRSRKSGNGRKESKRKSSKSKSSRPRRAAAK
NALSWFSKITGRSKDAEEEEDVSELSGSSESESTTQDSGTGDSELDVALLNGHGKQSKGK
NILVCDSDDGAQECDIRETHPAERKRLVVRFPVKNSDKLTLLENLPGTSSHVPTPTLGNG
CAEDSSIPENLGHTNQFNGLDASEVKWGMVKARTSKRMRGEAKSSHGLMGSEPEGKEKNV
NEDENHHDNGVTAPSCLELRTDTDGVAVDAHLAISNGLPNGDERCLIVDGSPSRMADDGA
SKCSQDVTGPLHDLKDSLPPLSRTLRIRSKRASRAPDTSLKQEVKSSSMNEENGGSVALN
DGSADTRCDLALESQNDGVVGTEQSLRNDSAHESNPPISDPVSIANDVHVSHPKRMFDFV
YRRLKSRKHKNNSDGGATLSQEISLGSCSQDQSSGANSHEVVANGFRGTESNGLEKSEGS
LTDSRDKLSNSRGNQNSQEEERSTSGATLRLRSTRNRRSTYPFSETKPAETKKPQQSTEK
VSWLTLSTHEEGSRYIPQKGDEVAYLRQGHQEYLNFSSPREVAPWTSIKGGNMKAVEICK
VESLEYATLAGSGDSCCKMILKVIDPNSEVFNKTFKLTLPDVVTFPDFIVERSRYEAAIQ
RNWTFRDKCKVWWRDEGEEDGSWWEGRILAVKAKSPDFPDSPWERYTVKYKSDPTETHLH
SPWELFDADTKWEQPHIDDDERKRLLLALTKLETSNKRTKDSYGLQKLNQTVGSSSYTNM
FPVPLSLEVIRSRLENNYYRSVEALRHDVAVMLSNAETFFGRNKSVAAKISHLSKWFDRT
LPS
NT seq 5052 nt   +upstreamnt  +downstreamnt
atggctcttaggaaaattactccgaaagccgattcagtctctcccccgatgaaacctttg
agtttgtctaaacaattgccagggaatgtgcagatggcagacccagatattgctcaaaat
gttgtacctaacatcgacttggacatgcgggaagtttactttttgatgctccacttactt
tcctctgggccatgccagagaacttatgcactgttgcgacatgaacttcttgagcatgag
cttcttcccagaagatatcatgcttggtactcgaggagtgggttgcctagtggggatgag
aatgatgatggagattcctttcctttaaactatgctgagttggtcaagaggtattctcac
gtaaaaaaagatcacttggtggagctcctgaagcaattagtctttgtttcaagtaggcct
actccctcacgcggtctcggtgatggaaatggaaacaaactgattgcagctggtgtccca
acacttttagggactggctcgttctcccttttgagctatgacaaggacatagttggaagt
gatctcaaaccaccacctattagcatgcgttggcctcatatgcgtgctgatcaggtgcgt
ggtttaagtttgagggaaattggtggtggttttgccagacatcatcgagccccatcgatt
cgtgcagcatgttatgtcattgcaaaaccatctacaatggtacaaaagatgcagaacatc
aagagggtacgtggacacagaaatgctgtgtactgtgctatatttgatcgctcaggaagg
tatgtaatcactggttcagatgatcgccttgtaaaagtatggtcaatggagactgcatac
tgcctgaccagctgtcgagggcatgaaggtgacataactgatcttgctgtgagttcaaac
aacactttcatagcatccgcatcaaatgattgtgtaatccgcgtttggcgattgccagat
ggcttaccagtttcggtacttcgtggacataccggagctgttactgctattgcatttagt
cccagacctggatccccgtaccagcttctttcatcgtcagatgatggtacatgtagaata
tgggatgctcggggtgctcaatttgctccgcgaatatatctccctaggcctcctagtcct
gatggaaagaacaatgtcccttcttctagtaatgctcagcagagtcaccaaatcttttgc
tgcgcattcaatgccaatggatctgtatttgtcactggcagctctgacactcttgctaga
gtatactcggtttggagtgctaacaagatcaataatgatgatcatcagccaaatcatgag
atggatgttctggctggacatgagaatgatgttaattacgttcagttcagtggttgtgct
gcaggatataaatttgccgtaactgactactcaaaagacgatagtgttccaaaatttaag
aattcctggttctgtcatgataacatagttacatgctctcgtgatggtagtgcaatcatt
tggatcccaagatcacggagatcacatgggaaaagctgccgatggacacgagcatatcat
ctcaaggttccacctccgcccatgcctcctcaacctcctagaggcgggccacgtcaaagg
atcctgcctactcctcgtggggttaatatgattgcttggagtctggataatcgttttgtc
cttgcggctatcatggattgtaggatatgcgtgtggaatgcctctgatggtagcttggta
cattctttgactggccatacagcatctacatatgttatggacgtccatccttttaatcct
cggatagctatgagtgctggctatgatggacaaacaatagtgtgggatatatgggaaggc
atacctatcgaaacatacaagatttcacacttcaagttggtcgatgggaagttttcaccg
gatggaacgtcaattatactttcagatgatgtgggccaactctacgtattaagcacaggc
caaggggattctcaaaaggacgctaaatacgatcagttcttcttgggggattatcggcca
ttaattcatgacctatatggtaatgtccttgaccaggaatctcagcttccgccttatcgc
cgaaatatggaggatcctctttgtgattcagcgatgattccatatgaagagccatatcag
acaatgtttcagaaacggcgacttggcgccttaggcaaagaatggcgaccatctgcttta
aagctggctgtagggccagatatcactttggatcaagattaccaaatgccacctctggca
gatctagacttagctgaaccgttgccagaatttgtagatgtaatggagtgggaaccagaa
gtcgatatcttgagcgatgaaaatgactccgaatacaatgtgccagaagagtattcgtct
gaaaaagagcaagaatgtttaaactcttcaacctctggtgagtcaggttccagttcaagt
gaaagcgatgaggacggtgataatcagaatagccttagaagatccaaaagaaaaagacat
aagacaggagctgggatcatgacttcttcgggtaggcgtgttaaaaagaaaaacgttgat
gagcttgaaggagctacaaacaagaacaaacgtagcaggaaatctgggaatggtcgtaaa
gaatcgaagagaaaatcatcaaaatctaaatcgtccagacctaggcgagcagctgctaaa
aatgccctctcttggttttctaagattactggtagatctaaagatgcagaagaagaagag
gatgtctctgaattgagtgggtcatcagaaagtgaatcgacaacacaggactcaggcact
ggggatagtgaacttgatgtagctttgttaaatgggcatggcaagcaatcaaaagggaaa
aacattctcgtatgtgattcagacgatggggctcaagagtgtgatattagagaaactcat
cctgctgaacggaagagattggttgtcaggtttcctgttaagaactcagataagcttacc
ttgctggagaacctacctggaacatcttctcatgttccaactccaactttagggaatggc
tgtgccgaagactcaagcattcctgagaaccttggacacactaaccaatttaatgggtta
gatgcaagtgaagtcaaatggggaatggttaaggctcgtacatcaaagcgaatgagaggt
gaagcaaaatcatcgcacggacttatgggctctgagccagagggaaaagaaaaaaatgtt
aacgaagatgaaaatcaccatgataatggtgttacagcacctagttgtttggaattaaga
acagatacagatggcgtagcagttgacgcccacttggcgatttctaatggtttgccaaac
ggtgatgaacgatgcctaatagtggatgggtcgccaagtcgaatggctgatgacggtgct
tctaaatgttctcaggatgtaaccggtcccctgcatgatctgaaagatagccttccacct
ctctctaggacgttgaggatacgctccaagagggcttcaagggctcctgatacatctttg
aagcaagaagtaaaatcttcatcaatgaatgaggaaaatggtggctctgtcgcattaaat
gatggttctgcagacactagatgtgatttggcattggaatctcaaaatgatggtgtggtt
ggaacagagcagtctctgagaaatgattcagcgcatgaatcaaatccgccgatcagtgac
cctgtctctattgctaatgatgttcatgtgtcacatcctaaacggatgtttgattttgtc
tatagacgactgaagtcacgaaagcataagaataactcagacgggggtgctactcttagt
caagaaataagtctaggttcttgtagtcaggatcagagtagtggcgctaattcccatgaa
gttgtcgctaatgggttccgtgggacggagtcgaatggattggagaagtcggaaggcagt
ttgacagacagccgagataaactaagtaattcacgcggaaaccaaaactctcaagaagaa
gagagatcaacttctggggcaacacttcggttgagatcaacaaggaatagaaggtctact
tatccttttagtgaaactaaacctgctgaaacaaagaagcctcagcagtcaacagaaaag
gtatcctggttgacattgtcaacacatgaagagggttctcgttatatcccacaaaagggg
gatgaagttgcgtatttgcgacaggggcatcaagaatacttaaactttagctctccgagg
gaagtggctccttggacttcaataaagggggggaatatgaaggcggtggaaatttgtaaa
gtggaaagtcttgaatacgcaacacttgctggttctggggatagctgctgcaaaatgata
cttaaagtcatcgatccaaactctgaagtgttcaacaaaactttcaaacttacattgcct
gatgtggtgacatttccagattttatagtggaaagaagtcggtatgaagcggcaatacag
aggaactggactttcagggataagtgtaaggtttggtggagagacgaaggcgaagaagat
ggtagttggtgggaaggacggatcttagctgtgaaagccaaatcacctgattttcctgat
agtccgtgggagaggtacacagttaaatacaagagtgatccgactgagacgcatcttcac
agtccctgggagctttttgatgctgataccaagtgggaacagcctcacattgatgatgat
gaacgaaagcgtcttctcttggccttaacaaagttagagacttcaaataaaagaaccaag
gattcttatggccttcaaaaactgaaccaaaccgtgggaagctccagctacaccaacatg
ttcccagttccgttgtctcttgaagtaatcagatcgaggcttgagaacaactactaccgg
agtgtggaagcattaagacacgacgtagcagttatgttgtccaatgcagaaactttcttt
ggtcgaaataaaagcgtagcggccaaaatctcacatctctctaaatggttcgaccgcacg
ctaccctcgtag

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