Brassica oleracea (wild cabbage): 106306239
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Entry
106306239 CDS
T04124
Name
(RefSeq) FACT complex subunit SSRP1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
boe03000
]
106306239
03036 Chromosome and associated proteins [BR:
boe03036
]
106306239
Transcription factors [BR:
boe03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
106306239
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
106306239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
SSrecog
Rttp106-like_middle
HMG_box
HMG_box_2
HMG_WDHD1
CDC45
YL1
MlaC
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
106306239
NCBI-ProteinID:
XP_013598237
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Position
C7:35267129..35271063
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AA seq
642 aa
AA seq
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MADGHSFNNISLSGRGGTNPGLLKINSGGIQWKKQGGGKAVEVDESDIVGLSWMKVPRTN
QLGVKTKDGLYYKFIGFRDQDVASLTSFLQSAFGKTPEEKQLSVSGRNWGEVDLNGNNLT
FLVGGKQAFEVSLADVSQTQLQGKNDVLLEFHVDDTAGANEKDSLTEISFHIPNSNTQFV
GDETRPPAQVLHDRIMAVADVGAGIEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQAN
DFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDSVVESELSIS
DDLLTTKFKDKLEPSYKGLIHEVFTTVLRGVSGAKITKPGKFRSSQDGFAVKSSLKAEDG
VLYPLEKGFFFLPKPPTLILHDEIDNVEFERHVAGGANMHYFDLSIRLKTDHEHLFRNIQ
RNEYNNLYSFISSKGLKITNLGGAATAEGVAAVLQEDDDAVDPHLERIRNQAADESDEED
EDFVGGEDDDGGSPTDDSGGDDDDSDASDDGEGEKEKSITKEPKKETKSLPPKKKAVATE
EGSSKKRKVKRKKDPNAPKKAMSGFMYFSQMERDNIKKTRPGLGFGDVAKVLGDKWRQMS
AEEKEPYEAKAQVDKKRYEDQISDYKNPQPMLVDSENDSDSN
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggacattccttcaataacatctctctcagtggtcgcggcggaacgaaccca
ggcctcctgaaaataaactctggagggattcaatggaagaagcaaggcggtgggaaagct
gtggaagtcgatgagtctgatatcgttggcctcagctggatgaaggttccaaggaccaac
cagcttggtgtcaaaaccaaagacgggttgtactataagttcattggctttcgtgatcag
gatgttgcaagtctgacgagctttctccaaagtgcgtttgggaaaacacctgaggagaaa
caactctctgtcagtggtcgcaattggggtgaggtggatttgaatgggaacaatctaacc
tttttggttggtggaaagcaagcttttgaagtgtcactcgctgatgtttcacagactcag
cttcaagggaaaaatgatgtcttgttggagtttcatgttgatgatactgctggtgccaat
gagaaagactcgttgacggagataagttttcacattcctaattccaacacccagtttgtt
ggtgatgaaactcgtccgcctgctcaagttctccatgacagaatcatggcggtggctgat
gttggtgctggaattgaagaggcggtcgtcacatttgatggtatcgcaatcctcacaccc
aggggtcggtacagtgtggagcttcacctttccttcttacgattgcaaggacaagctaat
gacttcaaaatccaatacagtagtgttgtccgcttgtttttgcttccaaagtcgaaccag
ccacatacgtttgttgttatctctctagacccaccaatccggaaaggtcagacgatgtac
ccccatattgtgatgcagtttgagactgactccgtcgtcgaaagcgaactgtcaattagt
gatgatcttttgactacaaagttcaaggacaagttggagccatcatacaagggcctcatt
catgaagtcttcaccacagtgttgcgtggggtgtctggtgcaaagatcaccaaaccaggg
aagttccgcagttcccaagatgggtttgcagtgaaatcatctcttaaggcagaagatggt
gtcctttatccacttgagaagggcttcttctttttacctaaacctccaacgcttatactt
cacgacgagattgacaatgtggagttcgaaaggcatgttgctggtggtgctaacatgcat
tacttcgatctttccataagactgaaaactgatcatgaacatctgttccggaatattcag
aggaatgagtataataatctctactccttcataagctctaagggtttgaagattacgaac
cttggaggtgcggctaccgcagagggtgttgctgccgttcttcaggaggatgatgatgct
gttgaccctcatcttgagcgtatcagaaaccaagctgctgatgagagtgacgaggaggac
gaagactttgttgggggtgaggatgacgacggtggttcaccaactgatgattctggcgga
gacgacgacgactctgatgctagtgacgatggcgaaggagagaaagagaaatctatcacg
aaggaaccaaagaaagagacgaaaagcttgcccccgaagaagaaagcagtagccacagag
gaaggcagtagcaagaagaggaaggtgaaaaggaagaaggatcctaatgcaccaaagaag
gcaatgtctggtttcatgtacttctcccaaatggaaagagataacataaagaagactcgc
ccaggactaggatttggagatgtggcgaaggtgcttggagataagtggcgtcagatgtct
gccgaggaaaaagagccgtatgaagctaaggcacaagtcgacaagaagcgatacgaggat
cagattagtgattacaagaaccctcagccaatgcttgtagactcagaaaatgattccgac
agtaactaa
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