Brassica oleracea (wild cabbage): 106307171
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Entry
106307171 CDS
T04124
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106307171
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106307171
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
DUF2556
CarboxypepD_reg
PhoLip_ATPase_N
Motif
Other DBs
NCBI-GeneID:
106307171
NCBI-ProteinID:
XP_013599499
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All DBs
Position
C8:complement(19121620..19125156)
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AA seq
695 aa
AA seq
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MFLFSSRVFHLVTTTGYRRHLLRQKGWMIALIMLLSLFEIVISQNQSYDPETIQVLQLLY
QDGHVVIDNGIFQLTLSNPEGFVTGVRYNGIENVLAYTGHENDRGYWDLVWNFPGKKTKK
TKGTLDRIEATKMEVITQNDEQIEISFSRTWNASSNVTVPVNIDKRFVVLRNSSGFYTYA
IFERLQGWPAVEIDNIRLAIKLDKDKFDYMAISDERQRYMPLPDDRIPPRGKPLAYPEAV
QLLDPVEPEFKGEVDDKYEYSMESKDIKVHGWISTNDSVGFWQITPSNEFRSAGPLKQFL
GSHVGPTNLAIFHSTHYVGEDLIMKFEEGEAWKKVFGPVFIYLNSFPKEVDPLLLWLEAK
NQTKIEEEKWPYNFTNSSDFPASDQRGHVSGRLLVRDRYISSEDIPANGSCLGLAAPGDV
GAWQREYKGYQFWSKADEEGYFCINNVRSGRYNLYAFAPGFIGDYHNETVIDISPGSNIC
LGELVYEPPRDGPTLWEIGVPDRTAAEFYIPDPNPMFVNKLYVNSSENKYRQYGLWERYS
ELYPDEDMVYDVDVDDYSKDWFYMQVTRKLDDGGYNGTTWEIKFQFDDQMENLTGDFKLR
IALATSNVAELQVRVNNVSVDPPLFTTGQIGKDNTIARHGIHGLYWLYSVDVPASSLCPG
NNSIYLTQPLAISPFQGFMYDYIRLEYPDSVNHIT
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgttctcttcacgtgtttttcatctcgtgacgaccacaggttaccggagacac
ttattgagacaaaaaggatggatgattgctttgatcatgctcttgtctttgtttgagatt
gtcatctcccagaaccaaagttatgatccagaaacaatacaagtcttgcaattactttac
caagatgggcatgtggtgattgacaatggaattttccaattaactttgtctaatcctgag
ggatttgtgaccggagtccggtacaacggtatcgaaaatgtgcttgcctataccggccat
gaaaatgatagaggttactgggacttagtgtggaactttccaggaaagaaaactaaaaag
accaaaggcacactagaccggattgaagcaacaaagatggaagtgataacgcagaacgat
gaacagatagagatatcgttttctaggacatggaatgcttcttcaaatgtgactgttcca
gtgaatatagacaagaggtttgtagtgctgcgaaactcgtcagggttctacacttatgcc
atcttcgagaggttacaagggtggcctgctgttgaaatcgataatattcgattagcaatt
aagctagacaaggacaagtttgattacatggcgatttcagatgagaggcaaaggtacatg
cctctgccagatgataggattccgcctcgaggtaagcctcttgcttaccccgaggccgtt
caacttctagaccctgttgagcctgagtttaaaggagaggtggatgacaagtatgaatac
tcaatggagagtaaagacataaaagttcatggatggataagcacaaatgactcagttggg
ttctggcagatcactccaagcaacgagttccgatctgctggtccactcaagcagttccta
ggctcacatgttggtccaaccaacctcgctatatttcatagtactcactatgttggagaa
gatctaatcatgaaatttgaagaaggtgaagcatggaagaaagtatttggacctgtcttt
atttatctcaactctttccctaaagaagttgatcctctcttgctctggcttgaagccaag
aaccagacaaagattgaagaagagaagtggccttataacttcacaaattcaagtgatttt
cctgcttctgaccaaagaggacatgttagcggtagattactcgttagagaccggtacata
agcagtgaggatatacctgcaaacggttcctgcttggggttagctgcaccaggagatgtt
ggcgcatggcaaagagaatacaaaggttaccagttctggtcaaaggcggacgaagaagga
tacttttgtataaacaatgtgagaagtggtcgttacaatctctatgcatttgctcctgga
ttcatcggtgattaccacaacgagaccgttatcgacatttctccaggttcgaatatatgc
ctaggagagttggtgtatgaacctccaagagacggtccaactctatgggaaattggtgta
ccagaccgaaccgctgcagagttctacattcctgaccctaacccaatgtttgtgaacaaa
ctatacgtaaacagttctgaaaataaatacagacagtatggattatgggaacggtattca
gaattgtaccccgatgaagatatggtctacgatgtcgatgttgatgattactctaaagat
tggttctacatgcaagtcacaaggaagctagatgatggaggatacaacggtactacatgg
gagatcaaatttcaatttgacgatcaaatggaaaatcttacgggagatttcaaactgcga
atcgctctagccacatcaaatgtagcagagttgcaggttcgggtgaacaatgtttctgtg
gatcctccattgtttacaacgggacaaataggaaaagataatacaattgcaagacatggt
attcatggactctattggttatacagtgtggatgtaccagcttcttctctttgcccggga
aataactcaatatatctaacccaaccgctagccataagcccatttcaaggattcatgtac
gattacattcgtctagagtatcctgattctgttaatcatattacttag
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