Brassica oleracea (wild cabbage): 106308326
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Entry
106308326 CDS
T04124
Name
(RefSeq) probable pectate lyase 15 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106308326
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106308326
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106308326
NCBI-ProteinID:
XP_013600940
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Position
C8:12697354..12700986
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AA seq
451 aa
AA seq
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MASPSQKLTSVCLAVIVLLALTATIFRKLEIPSSRKLKTEELRSSKNNSTMAAKRVKGVE
LNEQHAVSDPDRVADEVASLVQMSEHNKTARRKLGFFSCGTGNPIDDCWRCDPNWHKNRK
RLADCGIGFGRNAIGGRDGRFYIVTDPTDDDAINPKPGTLRHAVIQEEPLWIVFKRDMVI
ELKQELIMNSFKTIDGRGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPS
HFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVML
LGHSDSYTKDKLMQVTIAYNHFGKGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPT
INSQGNRYAAPMDRFAKEVTKRVGTDASDWKKWNWRSEGDLLLNGAFFRASGAGTSASYG
RASSLAAKPSSMVHTITSTAGALGCRKGRPC
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccttctcagaaactgacctctgtttgcttggccgtcatcgtcctcttagct
ctcaccgcaacgattttccggaagcttgaaatccctagctccaggaagctgaaaacagag
gagctgcggagctcaaagaacaactcgacaatggcggcgaaaagggttaaaggtgtggag
ttgaatgaacaacacgcggttagtgatccagatagggtcgctgatgaagtcgcttcgctt
gttcagatgagtgaacataacaagacagcaaggaggaagctaggattcttctcttgtgga
accggtaatccaatcgatgactgctggcgttgtgaccctaactggcataagaaccgtaaa
cgactcgccgattgtgggattggttttggacgcaacgcaattggtggtcgtgatggacgc
ttctacattgtcactgaccccactgatgatgacgctattaaccccaaaccaggaactcta
cgccacgctgttatccaggaggagcctctgtggatcgtgttcaagagagacatggtgatt
gagctgaaacaggagctgattatgaacagtttcaagaccattgatggtcgtggttccaat
gtccatatagccaatggtgcttgcatcactatccagtttatcaccaatgttatcattcat
ggtctccacattcatgactgcaaacctactggaaacgcaatggttagaagctccccatct
cattttggttggaggacaatggctgatggcgatgcagtctctatctttggatcgtctcat
atctggattgatcataactctctctctcactgtgctgatggccttgttgacgctgtcatg
ggttccactgctattaccgtatccaataaccactttacacaccacaatgaggtgatgttg
ctaggccacagtgattcgtacacaaaagacaagctgatgcaagtgaccattgcttacaac
cattttggaaaaggactggttcagagaatgccaaggtgcagacatgggtatttccatgtg
gttaacaacgactacacacactgggagatgtatgccattggtgggagtgcagagccaacc
atcaacagtcaaggaaacagatatgctgctcctatggatcgtttcgccaaggaggtaacg
aaaagagtagggacggatgcaagtgattggaaaaagtggaactggaggtcggaaggagat
cttctactgaatggagcattcttcagggcatcaggagcaggaacttcagctagctatgga
cgagcctcaagcttagcagctaaaccatcatcaatggtccatactataacctctactgca
ggagcactaggttgccgcaaaggcaggccttgctag
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