Brassica oleracea (wild cabbage): 106309435
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Entry
106309435 CDS
T04124
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106309435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106309435
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106309435
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106309435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
WEF-hand
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
106309435
NCBI-ProteinID:
XP_013601914
LinkDB
All DBs
Position
C8:41690240..41703247
Genome browser
AA seq
2355 aa
AA seq
DB search
MLMVPSKVAGHTRFLLESFNGSDVDSIAQEICQLVDVGIETSIPALKTCIDCFTVRRSHP
NALQLEKLVSLVFKRVLNNSNNLQTLISHALQDVEVTDDFVDDLTNALGFSIPEKVSVAL
VLADSERSDAKSSGRNLLLAEIEQLCATPGQLESTEQIQNVVLFLQQSEDLSSHLDSFLR
ILSSAQPRDDFSFALTPFLSPQDHQSYVFSDNEIEAILDEIDKELAVGDLMGELGCGLTA
DAQQCKEILSTFAPLREAAIARTLANVARACPDREDNHTTFPTFALALGCCLPTELPTPR
SWNADILIETIIQLAPATSWRKVIENLDHSGFDIPNMESFSFFMRLYKTACKDPFPLDAV
CASVWKNMEGQLSFLKHAIAAPPEVFTFTHSPKKLVYVDNNMHSHEQQLGLSNQAWLSLD
LLDVLCQLAERGHTVLVSSLLHYPLTHCPKTLLLGMAHIKTAYNLIQREVLSVVFPLIIT
NSQDSGFILHLWHQNAELVLWGILNAQNLKVDSILRIIEICHELKILSVVLESVPVSFSI
RLAALASLRGFLDIENWLPNCLYVYKDTFAVECLKFVKNVHFSQSEDFTSKYFHPSDPLS
DLHLDATALLLKVLKAHDNVITSSQLVEDIEKVNAAILDCNSKLQNGEAKDSSASNAYGE
DVEAEANAYFHQMFSGQLSVDAMVQMLSLYKDSLVQREKSIFECMIDNLFEEYRFFPKYP
ERQLKIASILFGSVIKHQLISSITLGMALRLVLDSLRKPADSKMFLFGSKALEQFVNRLV
ELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASVSHPGLSQSFPGNGEFG
SGIGQSALQLPSPVLPQQTNEVHIDDRSRVPSVPSNEAKPLLPSSSNISVDVSVTPKNPG
ISTSSSTSAGFVRPARGATSTRFGSALNIETLVAAAERRENAIEAPPSDVQDKISFIINN
ISLANIESKGKDFAEILPQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLFKEI
LQNTYENCKRSLLKNLGSWLGKLTIGRNHVLRAREIDPKSLIVEAYEKGLMIAVIPFTSK
VLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDLKEVAPTS
LLKDRKREIDGNPDFSNKDLGVTHISQPPIIQEPKTISPLKQIDLPIDVANTDIPSKLLS
QYVAPQRVYANTLMEDEKVATLGLPDQLPSPQGLFPSSPSPLFSTSQPPALPNIGNHVVI
NQKLSGFGTHFPFPRVVPLAMDRAIKDIVSGIVQRSVCIACQTTKELVLKDYALEPDETR
IYSAAHLMVASLAGSLAHVTCKEPLRTSISGHLRSSLQGNIKNEALEQIVQLVTNDNLDL
GCAAIEQAATEKAVQTIDADIAQQLLLRRKPRDGAGSSLSQNSVSFIPESLRPKPGQLSL
SQQRVYEDFVQLPWQKQSTHTSHGLSAASSSSGEVGLGSNYGPVSGKSASDSLSGAEHAR
MDMVSRASDLSVEGFESPVSLLSSQVDPAGETGDLQFSNSISTSELSLVESSDTAMKETG
TSLQTLTSAATMERLGGSNITQPSLSTRDALDKYHIVMQKMEDLVANNAGDGEIQVVVSE
VPEMILRCISRDEAALAVAQKAFKALYENASSSLHVSANLAILVAIRDVCKRVVKELTSW
VIYSEEERKLNKDITIGLIQRELLNLAEYNVHMAKHLDGGRNKRATDFSISLLQSLVTEE
SSVISELHSLVDALAKLSSKSGSPESLQQLIDIIRNPVTNTSGLSDSASGNENNDRQSKD
EKVVCNTTANTEENASWEYVDADPAGFRNRVSTLFKNWYQICEVSGANETACSQYVSHLH
QTGLLKGDDTTESFFRILLELSVAHCISSEEISSGAGQSPQQAQSPSFLIIDIYAKLVFS
VLKYFPEQESSIKLFLLSEIMAVTVRSIQKDAEDKKTSLNPRPYFRLFINWLLDLCSLDP
GTDGTNFQVLTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKMLTVNGQKGWPYVQRL
LVDLLQFLEPFLRNAELGGPVNFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPSSCIQ
MRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSGVDAVLKAKQMKNDVDEYLTL
RQQNSTFLSELKQKLLLSSNEAGSAGTRYNVPLINSLVLYTGMQAIQQLQAGETQAQNVV
ALHMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLFFESNQEIIIQEQIT
RVLLERLIVNRPHPWGLLITFIELIKNPRYGFWQHAFIRCAPEIEKLFESVARSCGSLKP
VVDEGMVSGWADNNH
NT seq
7068 nt
NT seq
+upstream
nt +downstream
nt
atgctgatggttccgtcaaaggtcgccggccatacccggttcttgctcgagagttttaat
ggttccgatgtcgactcaatcgctcaagagatctgtcagttggttgatgttggtattgag
acaagcattccagctctcaagacgtgcatagattgcttcaccgtccggagaagccatcct
aatgcgttgcagcttgagaaacttgtatccttggtcttcaaacgcgttttgaacaactct
aataatctccaaaccctgatttctcacgcactccaagatgttgaggtcactgacgatttt
gtggatgatttgaccaatgcgttgggcttttcaatccctgagaaagttagcgttgctctg
gtcctcgccgattctgaaagatccgatgcaaagtcaagtggacgaaacttattattggcc
gagatcgagcaactgtgtgccactcctggccagctcgagtcaactgagcaaattcagaat
gttgtcttgtttctccagcaatctgaggacctctccagccatttggattccttcctccgt
atcctctcttctgctcaacctcgagatgacttctcttttgctcttacgcctttcctttct
cctcaagatcaccaatcttatgttttcagtgacaacgagattgaggctatccttgatgaa
atcgataaggaacttgctgttggagatctcatgggtgaattaggttgtggtctcactgct
gatgcccagcaatgcaaagagatcttgtctactttcgcaccattaagagaggctgctatc
gccagaactcttgcaaatgtcgctcgtgcatgtcctgatcgtgaagataatcacaccacc
tttccaacattcgctctggcccttggatgctgccttccaactgaacttcccacgccaagg
tcgtggaatgctgacatcttaatcgaaacaatcatccagcttgctcctgccacaagctgg
aggaaagtaatcgagaatctcgaccatagtggatttgacatccctaatatggagtctttc
tcgtttttcatgcgcctatataaaactgcttgcaaggacccatttcctctggatgctgta
tgcgcttctgtctggaaaaatatggaaggtcaattatcctttcttaagcatgcaatagcc
gccccaccagaagtgttcacctttacgcattctccaaagaagctggtatatgttgataat
aacatgcacagccatgagcaacaattaggactttccaatcaagcttggctatctctcgat
ctcttagatgtgttatgccagctggccgagagaggtcatactgttttagttagttcgctg
ctccattatccactcacacattgtcctaaaaccctgcttcttggaatggcacacatcaaa
actgcctataatctcatccagcgagaggtgctttctgttgttttcccactgataataacg
aattcccaggatagtggttttatccttcatctctggcatcaaaatgctgagctcgttctg
tgggggattttaaatgcccaaaatcttaaagtagacagcatactcagaataattgaaatc
tgccatgagctcaagattctctctgtcgttttagaatcagttccagtctcattcagcatc
agattggcagcccttgcctcactgagaggatttttggacattgagaactggctgccaaac
tgtctatatgtgtataaggacacctttgctgtggagtgtctcaaatttgtcaagaatgtg
cattttagccaatcggaggattttacttccaaatatttccatccgtctgatcctttatca
gatcttcatttggatgcaacagctttgcttttgaaagttttgaaagctcatgataatgtg
attacttcatctcaactggtagaagatatagaaaaagtaaatgcagcaatcttggattgt
aattcgaaactgcagaatggcgaagctaaagattcatcagcgtccaatgcatatggagaa
gatgttgaggcagaagcaaacgcttattttcatcaaatgttttctggtcagctgagtgtt
gatgctatggttcaaatgctttccttatacaaggactctttggttcagagggaaaaatca
atttttgaatgcatgattgataatctatttgaggaatatcgttttttccccaagtatccc
gagaggcagctgaaaatagcttccattctctttggttctgttatcaagcaccagcttata
agctcaatcacattgggtatggcactgcgtctagtcttggattctttgcgtaaacctgca
gattcaaaaatgtttctctttggaagcaaagctctggaacagtttgtgaatcgtctggtt
gaattgcctcagtactgcaaccatattttacaaatatctcatctgcgtagcactcatccc
gagttagtcactgttattgaacaagcactttcaaggatatcatctggtaatttagagtca
gatgcctctgtttcgcaccctggtctttcacagtctttccctggaaatggcgagtttggt
tctggaattggtcaatctgcgttgcaacttccttctcctgtgctgcctcaacagacaaat
gaagtgcatattgatgaccgcagcagagtaccaagtgttccatctaacgaagcaaagccg
cttctgccgtcatcatctaacatttccgttgatgtttctgtcactcctaagaatcctggc
atttcgacttcttcatcaacctcagctggttttgttcgtccagctcgtggagctacttcg
acgaggtttggctctgctttgaacatagaaaccctggttgcagcagcagagagaagggaa
aacgcaatagaggctccaccgtcagatgttcaggacaaaatttcattcataatcaataat
atatctttagccaacattgaatctaaagggaaagattttgctgagattttgcctcagcag
tactatccttggtttgcacagtatatggttatgaaaagagcaagcatcgagcccaatttt
catgatttgtacttaaagttcctggacaaagttgattccaagctgttatttaaggagata
cttcaaaatacttacgaaaattgcaagcgatccctgcttaaaaatttaggcagttggctt
ggaaagttgaccattggaaggaatcatgttttaagggcgcgagaaatagatccaaaatcc
ttgattgtggaggcttatgaaaaagggttgatgatagcagtaattccattcacttcaaag
gttcttgaaccatgccaaaacagtattgcgtatcagcctcccaatccttggacgatggct
atacttgggttactcgctgagatctattcaatgccaaacctaaaaatgaatctgaagttt
gatatagaggttctattcaagaaccttggtgttgatttgaaagaagtagcgccaacttcc
cttctaaaggatcggaagagagaaatagatgggaatcctgattttagtaacaaagatctt
ggagtaacacatatatctcaaccaccgataatccaggagcctaaaacaatttctcctctt
aagcaaatagacctacctattgatgtagcaaatacagacattccctcaaagttattatca
cagtatgtagccccacaacgtgtgtatgctaatactttgatggaagacgaaaaagtggca
actttaggcttgcctgatcagctcccgtcacctcaaggactgttcccgtcaagtccatcc
ccattgttttctactagccagccaccagcgcttcccaacattggaaatcatgtggttatc
aatcagaaattaagcggatttggtacgcactttccatttccgagagtggtaccacttgcc
atggatagagctatcaaagatattgtgtctggtattgttcagagaagtgtttgcattgct
tgccaaacaacaaaagagcttgttctgaaggattatgccttggaaccagatgagacacgt
atatatagtgcagctcacttgatggtagcgagtttagctgggagtttggctcatgtgacg
tgcaaggaacccctgcgcacttcaatttcaggtcatctgcggagttcgctccaggggaat
attaaaaatgaagctcttgaacaaattgtgcaacttgtgaccaatgacaaccttgatctg
ggttgtgctgccattgagcaggcggctacagagaaggcagtacaaactattgacgcggac
attgcccagcaattgttgttacggagaaagcccagagatggggctggatcctccctatcg
caaaattctgtcagttttataccagagtccctccgccccaaaccgggacagctgtccctg
tctcaacagcgagtttatgaggactttgttcaacttccttggcaaaagcagtcaacccac
acttcacacggtttatctgctgcttcaagctcatctggtgaggttgggcttggtagtaat
tatggtccagtatcaggaaaaagtgcttcggactctttgtctggtgctgaacacgcccgg
atggatatggtctcccgggcatcagatctttctgtggagggttttgaatctccagtttca
cttttaagctcacaagttgatccagctggtgaaacaggcgatcttcagttctctaattcc
atttcgacttctgagttgagcctggttgaatcctccgacactgctatgaaagaaactgga
acatcattgcagacattgacttcagctgctaccatggagcgtcttggtggaagtaatatc
acccagccttctctgtccacgagagatgcactggataagtatcatattgttatgcagaag
atggaggacttagtggctaataatgcaggagatggtgaaattcaggttgtagtttctgaa
gttcctgaaatgatcctcagatgtatcagcagagatgaagcagctctggctgtcgctcaa
aaagctttcaaggctctttatgagaatgcatcaagtagtcttcacgtcagtgctaaccta
gcaattcttgtggctattcgtgatgtttgcaagcgtgttgttaaagagctaactagttgg
gtgatttattcagaggaggagcggaagctcaacaaggatataactatcggtcttatccaa
cgcgagttgcttaacctagcggagtacaatgtccacatggcgaagcatcttgatggaggg
agaaacaagagagccactgacttctctatttctctgctccaatccttggtcactgaggag
tcgagtgtcatttcagagctacacagtcttgttgatgcactggcaaagctttcctcaaaa
tccggatctcctgagtcattgcaacaactaattgacatcatacgaaatccagttactaat
acaagtggtctctctgatagtgcatccggaaacgagaacaatgatagacaatcgaaggat
gaaaaggttgtgtgcaatacaactgctaacacagaagagaatgccagctgggaatacgtg
gacgcagatcctgcgggtttccggaatcgggtgtccacgctttttaaaaattggtatcaa
atttgcgaagtttccggtgcaaatgaaaccgcttgttcacaatatgtctcgcatttgcat
cagactggactacttaagggagatgatacaacagagagttttttcagaattcttctggaa
ctctctgttgctcattgtatatcttctgaagaaatcagttctggagctgggcaatctcct
cagcaagctcagagtccatcattccttattatcgatatttatgcaaagcttgttttttca
gtattgaagtatttccccgaacaggagtctagcatcaagttatttcttctttcggagatc
atggctgtaactgtgaggtctattcagaaggacgccgaagataaaaagacgtcactcaat
ccaagaccatattttagattgttcatcaactggctgctggacttatgttccctggatcct
gggactgatggaacaaactttcaggttctaacagcttttgccaatgcattccacgcgttg
cagcctcttaaggttcccgctttcagctttgcatggctagagctggtcagccacagaagc
ttcatgcctaagatgcttacagtaaatggccagaagggttggccatatgtgcaacgcctg
ctggttgacttgctccagtttcttgagccatttttgagaaatgctgaactcggaggacca
gttaatttcctatacaaagggacattgagagtgttgctggtgctgcttcatgacttcccg
gagttcctctgtgattatcattttactttctgtgatgtgattccttcaagttgcatacaa
atgcgaaatattattctcagttcttttccacggaacatgaggcttccagatccctctacg
ccaaatttgaagattgatttactgcctgagatagtagaagctccatgtatcctttccggg
gttgatgctgtgcttaaagcgaagcaaatgaagaatgacgtggacgagtatctcactttg
aggcaacagaattcaactttcctaagtgagttgaagcagaagctgcttctctcgtccaac
gaggccggctcagctggaacccgttacaatgtaccattgatcaactcgcttgtgctatat
actggaatgcaggctattcagcagctacaagcgggtgagactcaggctcaaaatgtggtg
gccttgcacatgttcaagtatttaagtatggaactagatacggaagggcgctacttgttc
ctcaacgcgatcgccaatcagcttcgatatcccaacaaccacactcattatttctccttc
atcatgctctatctcttcttcgagtctaaccaggagatcatcatacaggagcagataaca
agagtgttgttggaaaggctaattgtgaaccggccgcatccttggggactcctaataacg
ttcatcgagctcatcaagaatccaagatatggcttctggcaacatgccttcatcaggtgt
gctcctgaaattgagaagctctttgaatcggtcgctagatcctgtggtagtctcaagcca
gtagttgacgagggaatggtctccggttgggccgacaacaatcactag
DBGET
integrated database retrieval system
