KEGG   Brassica oleracea (wild cabbage): 106309446
Entry
106309446         CDS       T04124                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
boe  Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:boe00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:boe04812]
    106309446
Cytoskeleton proteins [BR:boe04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     106309446
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 Katanin_con80 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_EML_2 EIF3I Beta-prop_WDR3_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_EML Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st NBCH_WD40 WD40_RFWD3 eIF2A Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_VPS8 Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_ACSF4 VPS8_N Ge1_WD40 Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 106309446
NCBI-ProteinID: XP_013601923
UniProt: A0A0D3DY04
LinkDB
Position
C8:complement(38985023..38990275)
AA seq 950 aa
MAKRGYKLQEFLAHSANVNCLSIGKKTSRLLLTGGDDCKVNLWSIGKSTSLTSLCGHTSP
IDSVTFNTEEALVLAGASSGVIKLWNLQEAKVVRGFTGHISNCSALEFHPFGQYLASGSS
DANLKIWDIRKKGCIQTYKGHTRGISTVKFTPDGRWLVSGGLDNVVKIWDITAGKLLHEF
KFHDGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIAFHPDGQS
LFCGLDDGLKVYSWEPVICRDSVDMGWSTLGDMCINENKFVGCSYYRNSVGIWVSDISKL
EPYGAGSEDENECMVKRFSALDEQASERMKSGSRGSSSPDYETKEIKNIYVDSIGGNLKA
AIRKSEKQNANDKSSRTRMHSVVDSDSGEESSHSRSESVASSKTSPGMMLRPAHVRKTLA
KFEESASVHSGTRKKSSQDVEEETQTRNAEDSTIKGIMYKFEKALSSEPPTDEATRMLHK
PPRVQRSSYNNNYNESRRAMSVDSGTLNDSKGGMEYSGDLPASRILCNEDINSQHIVTKT
ERVVSPEKPGDEQTIKVVSGRTRSLVERFERGEKITHTEEADNTNAVEQDTHKTSRQTGE
TPVVVSTRRARSTPARVMPIVLNRDSNIKSDESPSTQPARTSSVPVILNQSTNDEPSVTL
TQSRTSPARTLPLTLNQATHIVMSRRPRRTSSARVRPMSLSQAVRMTSHECSVTSTRPDR
TSPPRVMPTKLNQTDDMASDTSHITSRRRTSPTQMLATPTEIDNLVDMAQDETHVSSQTD
SDITENLMQTHEEFLSTLQSRLTKLQIVRHFWERSDVKGAIGALRKLTDQSVQADVISIL
TDKIEILTLDMFSQLVPVLTSLLGSRTERPVNVSLDMLLKLVAVFGTVIRSTVSAPRIVG
VDLHADERIQICQVCSAGLHKIQRILPILARRGGLITRKAQELNLVLQQT
NT seq 2853 nt   +upstreamnt  +downstreamnt
atggcgaagcgtggatacaagctgcaggagttcctggcacattcagcaaatgtgaattgt
ctaagtatcggaaagaagacatcacgtctccttctaaccggaggagatgactgcaaggtc
aacctctggtcaatcggcaaatctacctctctaacgagtctttgtggacatacaagccct
attgactcagtaactttcaacacagaagaagctttggtcctcgctggagcttcttctggt
gtgattaagctctggaatctacaagaagcaaaggtggttcgaggttttactggacatata
tcaaactgttctgctcttgagtttcatccgtttggtcaataccttgcgtccggatctagt
gacgcaaatctaaagatttgggatatcagaaagaaaggatgcatccaaacatacaaaggt
cacactcgtggcattagtactgtcaaattcactcctgatgggcgttggttagtgtctggt
ggacttgacaacgttgtaaagatttgggatataactgctggaaagctactgcatgagttt
aagtttcatgatggacctattcgttccctagacttccaccctcttgagtttctcctagcc
actggttctgcagacaggacagtgaagttctgggatttagaaacgtttgaattgattgga
tctactagaccagaggccactggagttcgctcaattgcttttcatccagatggacaatcc
cttttctgtggattggatgatggcttgaaggtttattcatgggaaccagtgatatgccgg
gatagtgttgatatgggatggtcaacccttggtgacatgtgcatcaacgaaaacaagttc
gttggctgttcatattaccgaaactctgttgggatttgggtctcagatatatcgaaactt
gagccgtatggagctggatctgaggatgagaatgaatgcatggtgaaaagattcagtgcc
ttggatgagcaggcttctgagagaatgaagagtggctcaagggggagttcatccccggac
tatgagacaaaagagataaagaacatatacgttgactccataggtggaaatttaaaagcg
gctattaggaagagcgagaagcagaatgcaaatgacaagtcttccaggaccaggatgcat
agtgttgtggatagtgatagtggggaagaatcttctcactcaagaagtgaatctgtcgct
tcctcaaaaactagtccgggaatgatgctaagaccagctcatgttagaaagactctagca
aagtttgaagaatcagcgtctgttcattctggaactcggaagaaaagctcacaggatgtt
gaagaggagacacaaactcgaaatgctgaagactcaaccatcaaggggattatgtacaag
tttgaaaaagctttatcatccgaaccaccaactgatgaagcaactcgtatgctgcataag
ccacctcgtgtacagaggtcatcctataacaacaactacaatgagtcaagacgagcaatg
tctgttgattctggaactttgaacgacagcaaaggtggaatggagtactcaggagacttg
ccggcaagtagaatcttatgcaacgaggatataaatagccagcacattgtcaccaaaact
gaaagagttgtttcaccagaaaagcctggtgatgaacagacaataaaagttgtctccggg
aggacacgctcgttggtggagaggtttgagagaggagaaaaaattactcataccgaagaa
gcagataatactaatgcagtggagcaagatacgcataagacgtcaagacagacaggtgaa
actcctgtagtagtatctacacggcgagctagaagtactccagctcgagtgatgcctata
gtactcaaccgagatagtaacataaaatctgatgagtctccttcaacacaaccagctagg
acttcttcagttccagtgatactcaaccagtctaccaatgatgagccttctgtaacatta
acacaatctagaacctctccagcccggacattgcctttgacactcaatcaggcaacacat
attgttatgtcaagaagaccacgtaggacttcctcagctcgagtaaggcctatgtcactt
agtcaggcagtgagaatgacatcccatgagtgttctgtaacatcaacgcgtccagatagg
acttctcctccccgtgtaatgcccacaaaactcaatcaaactgatgatatggcatcggat
acatctcatatcacatccaggcgccgaactagtccaactcagatgctagctacacccact
gagattgataatctggttgatatggctcaggatgagacacatgtatcgtcacaaactgat
agtgacatcactgagaatctaatgcaaactcatgaggagttcttaagcactcttcaatct
agattgacaaagttacaaattgttaggcatttttgggaacgtagtgatgttaaaggggca
ataggggctttgagaaagttgacagatcagtctgttcaagcagatgtgatcagtattcta
acagacaagatagagattcttacattggatatgttctctcaattggtccctgtccttaca
agcttattgggtagcaggacagaaaggcctgttaatgtgtccttggacatgctcttgaag
cttgtagcagtgttcggtacagttatacggtcaactgtctcagctccaaggatagtcggc
gttgatcttcatgcggatgaaaggatacaaatctgccaagtttgttctgcgggactgcac
aagattcaaaggattcttccaattctcgcaagaagaggcggtctaataacaagaaaggct
caagaactaaaccttgttcttcaacaaacatag

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