KEGG   Brassica oleracea (wild cabbage): 106309656
Entry
106309656         CDS       T04124                                 
Name
(RefSeq) protein RRP45A
  KO
K03678  exosome complex component RRP45
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106309656
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106309656
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     106309656
SSDB
Motif
Pfam: RNase_PH RNase_PH_C NFACT-R_2
Other DBs
NCBI-GeneID: 106309656
NCBI-ProteinID: XP_013602188
UniProt: A0A0D3DUM4
LinkDB
Position
C8:32512589..32514940
AA seq 440 aa
MEGRLANMWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGHTHV
MGFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA
VDTESLCVLAGKKVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGESNQEV
IIHSLEEREPVPLIIHHLPIAFTFGFFNKGNIVVMDPTYIEEEVMCGRMTVTVNANGDIC
AIQKPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNREKSLQKVKRHPTLAKPEV
SGPIVVVKEGHKMSEDEAIAAEISREYVERLNLSSVELKSSKEQEAVAASPGNFKGGPSN
WDPYTEAMDVDSLKASLASRGVSVTKSTIKKKANDSGNVQKEVTGDLEMKDTAETTKHKS
GEMTLKDAVKPKKKRKNKSS
NT seq 1323 nt   +upstreamnt  +downstreamnt
atggaggggagattggctaatatgtggaggttgacggtgaacgaaagtaagttcgtggag
acagcgttgcagtccgagctcagagtagatggtcgtggtctttatgattaccgcaagctt
actattaagtttggcaaagaatatggtagctcagaagttcaacttggtcacactcatgtg
atgggttttgtgactgctcagctggttcagccttacaaagacagacctaatgaaggctct
ctatctatcttcactgagttttctcctatggctgatccttcctttgagcctggtcgtcct
ggcgaatctgctgtagagcttggacgtattatagaccgtggtctaagagagagtcgtgcg
gtggatacagagtcactctgcgttctagctggaaagaaggtctggtctgttcgcattgat
cttcacatcttagacaatggagggaacttggttgatgctgcaaatattgcggcgttggca
gcgcttatgacgtttagaagacctgactgcactgtaggaggagagagcaatcaagaagtt
atcatacattcactagaggaaagggagccagtcccactgataatacatcatctccctata
gccttcacgtttggatttttcaacaaaggcaacattgtggtgatggacccaacttatatt
gaagaagaggttatgtgcgggaggatgactgtgacagtcaatgctaatggagatatatgc
gctatccagaaacctggagaagaaggcgtgaaccagagtgtgatccttcattgcttgcgt
cttgcttcttcaagagctgctgcaacaactaagataatcagagaagaggttgaagcgtat
aaccgtgagaagagcttacagaaggtgaagcgacatcctactctggctaaacctgaagtt
tctggacctattgtagttgtgaaggagggacataagatgtctgaagatgaggcaatagct
gcagagatatctagggaatatgttgaaagattaaacctctcttcagttgaactcaaaagc
agtaaggaacaggaagctgttgctgcttctcctggcaatttcaaaggcggtccatcaaac
tgggatccttacacggaagctatggatgttgattcactgaaagcttcacttgcttcaaga
ggagtgtcagtgactaagtcaacgatcaagaaaaaggcgaacgattctggaaatgtgcag
aaagaagtaacaggagatttagagatgaaagatacagctgagactacaaaacacaagagt
ggagagatgacactcaaagatgctgtcaaacctaaaaagaagcggaaaaacaaaagcagt
taa

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