Brassica oleracea (wild cabbage): 106309656
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Entry
106309656 CDS
T04124
Name
(RefSeq) protein RRP45A
KO
K03678
exosome complex component RRP45
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106309656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106309656
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106309656
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
NFACT-R_2
Motif
Other DBs
NCBI-GeneID:
106309656
NCBI-ProteinID:
XP_013602188
UniProt:
A0A0D3DUM4
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All DBs
Position
C8:32512589..32514940
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AA seq
440 aa
AA seq
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MEGRLANMWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGHTHV
MGFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA
VDTESLCVLAGKKVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGESNQEV
IIHSLEEREPVPLIIHHLPIAFTFGFFNKGNIVVMDPTYIEEEVMCGRMTVTVNANGDIC
AIQKPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNREKSLQKVKRHPTLAKPEV
SGPIVVVKEGHKMSEDEAIAAEISREYVERLNLSSVELKSSKEQEAVAASPGNFKGGPSN
WDPYTEAMDVDSLKASLASRGVSVTKSTIKKKANDSGNVQKEVTGDLEMKDTAETTKHKS
GEMTLKDAVKPKKKRKNKSS
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggaggggagattggctaatatgtggaggttgacggtgaacgaaagtaagttcgtggag
acagcgttgcagtccgagctcagagtagatggtcgtggtctttatgattaccgcaagctt
actattaagtttggcaaagaatatggtagctcagaagttcaacttggtcacactcatgtg
atgggttttgtgactgctcagctggttcagccttacaaagacagacctaatgaaggctct
ctatctatcttcactgagttttctcctatggctgatccttcctttgagcctggtcgtcct
ggcgaatctgctgtagagcttggacgtattatagaccgtggtctaagagagagtcgtgcg
gtggatacagagtcactctgcgttctagctggaaagaaggtctggtctgttcgcattgat
cttcacatcttagacaatggagggaacttggttgatgctgcaaatattgcggcgttggca
gcgcttatgacgtttagaagacctgactgcactgtaggaggagagagcaatcaagaagtt
atcatacattcactagaggaaagggagccagtcccactgataatacatcatctccctata
gccttcacgtttggatttttcaacaaaggcaacattgtggtgatggacccaacttatatt
gaagaagaggttatgtgcgggaggatgactgtgacagtcaatgctaatggagatatatgc
gctatccagaaacctggagaagaaggcgtgaaccagagtgtgatccttcattgcttgcgt
cttgcttcttcaagagctgctgcaacaactaagataatcagagaagaggttgaagcgtat
aaccgtgagaagagcttacagaaggtgaagcgacatcctactctggctaaacctgaagtt
tctggacctattgtagttgtgaaggagggacataagatgtctgaagatgaggcaatagct
gcagagatatctagggaatatgttgaaagattaaacctctcttcagttgaactcaaaagc
agtaaggaacaggaagctgttgctgcttctcctggcaatttcaaaggcggtccatcaaac
tgggatccttacacggaagctatggatgttgattcactgaaagcttcacttgcttcaaga
ggagtgtcagtgactaagtcaacgatcaagaaaaaggcgaacgattctggaaatgtgcag
aaagaagtaacaggagatttagagatgaaagatacagctgagactacaaaacacaagagt
ggagagatgacactcaaagatgctgtcaaacctaaaaagaagcggaaaaacaaaagcagt
taa
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