KEGG   Brassica oleracea (wild cabbage): 106310401
Entry
106310401         CDS       T04124                                 
Name
(RefSeq) sm-like protein LSM1A
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106310401
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106310401
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106310401
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     106310401
SSDB
Motif
Pfam: LSM Hfq DUF2442
Other DBs
NCBI-GeneID: 106310401
NCBI-ProteinID: XP_013603087
UniProt: A0A0D3DWI9
LinkDB
Position
C8:complement(36315637..36316588)
AA seq 128 aa
MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVIEEAYERVIVGDL
YCDIPLGLYIIRGENVVLIGELDIEKEELPAQMVQVSEAEIKRAQKAEKEEMLLKGLMRK
RMEFLDLD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggctgctcctgatgatatcttcttctccacttctctcgccgcctacttagac
aagaagcttcttgtcttgcttcgtgatggtcggaaactgatgggtctacttcggtcattt
gatcaatttgcaaatgctgtaatagaagaagcttatgaaagagtcatcgtgggtgatctc
tactgtgatattcccttgggtctttacataatccgtggagaaaatgttgtcttgattggt
gaactggacattgaaaaggaagagcttcctgctcaaatggttcaagtctcagaggcagag
atcaaaagggctcagaaagcagagaaagaagaaatgctattgaagggtttgatgcggaaa
agaatggagttccttgatctcgattag

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