Brassica oleracea (wild cabbage): 106310401
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Entry
106310401 CDS
T04124
Name
(RefSeq) sm-like protein LSM1A
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106310401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106310401
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106310401
mRNA degradation factors
5'-3' decay
Lsm complex
106310401
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
DUF2442
Motif
Other DBs
NCBI-GeneID:
106310401
NCBI-ProteinID:
XP_013603087
UniProt:
A0A0D3DWI9
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Position
C8:complement(36315637..36316588)
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AA seq
128 aa
AA seq
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MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVIEEAYERVIVGDL
YCDIPLGLYIIRGENVVLIGELDIEKEELPAQMVQVSEAEIKRAQKAEKEEMLLKGLMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctgctcctgatgatatcttcttctccacttctctcgccgcctacttagac
aagaagcttcttgtcttgcttcgtgatggtcggaaactgatgggtctacttcggtcattt
gatcaatttgcaaatgctgtaatagaagaagcttatgaaagagtcatcgtgggtgatctc
tactgtgatattcccttgggtctttacataatccgtggagaaaatgttgtcttgattggt
gaactggacattgaaaaggaagagcttcctgctcaaatggttcaagtctcagaggcagag
atcaaaagggctcagaaagcagagaaagaagaaatgctattgaagggtttgatgcggaaa
agaatggagttccttgatctcgattag
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