Brassica oleracea (wild cabbage): 106311538
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Entry
106311538 CDS
T04124
Name
(RefSeq) phytochrome A-like
KO
K12120
phytochrome A
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106311538
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_9
PAS_4
HisKA
PAS_8
Chordopox_RPO7
Motif
Other DBs
NCBI-GeneID:
106311538
NCBI-ProteinID:
XP_013604186
UniProt:
A0A0D3DYA7
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Position
C8:39591764..39597097
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AA seq
1123 aa
AA seq
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MSGSRPTQSSEGSSRRSRHSARIIAQTTVDAKLHADFEESGGSSFDYSTSVRVTTPAVEN
NQPPRSDKVTTTYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPELLTMASHAVPSV
GENSVLGVGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCRTSAKPFYAIVHRVTGS
IIVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYD
RVMAYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKH
VKVLQDEKLSFDLTLCGSTLRAPHTCHLQYMANMDSIASLVMAVVVNEEEDGEATTTPQK
RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC
DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKEKVWKLGKTPSEFHLQEIAFWLCEHHAD
STGLSTDSLHDAGFPGALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDD
RDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGEATDVNTNIIH
SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI
GKHLLTLVEDSSVDIVQRMLENALEGTEEQNVQFEIKTHLSRTDAGPISLVVNACASKDL
HENVVGVCFVAHDLTAQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDESGWCTEWNPA
MSKLTGLKREEVVEKMLLGEVFGTQKKSCCRLKNQEAFVNLGIVLNNAVVTSQEAEKVPF
GFFTSGGKYVECLLCVSKKLDREGPVTGVFCFLQLASYELQQALHVQRLAERTALKRLKA
LAYIKREIRNPLSGIMFARKMMEGTELGPEQRRILQTSGLCEKQLSKILNDSDLESIIEG
CLDLEMKEFTLNEVLTASTSQVMMNSNGKNVCVTNETKEEVMSETLYGDSIRLQQVLADI
MLMAVNFTPSGRQLTVTASLRKDQLGRSVHLAYLEIRITHTGAGLPEFLLHQMFGSEEDV
SEEGLSLMVSRKLVKLMNGDVQYLREAGKSSFIITAELAAASK
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggctctaggccaactcagtcctctgagggctcctcaaggcgatcaagacacagc
gctaggatcattgcacagaccaccgttgacgcaaagctccatgctgacttcgaggagtca
ggaggcagttcctttgattactcaacctcagtgcgtgtaaccaccccagctgtggagaac
aaccagccgccgaggtccgacaaggtgaccacgacatatctccatcacatacaaaaggga
aagctgatccagcccttcggctgtttgctcgccttggatgacaagaccttcaaagtcatc
gcgtacagcgaaaacgcccctgagctcttgactatggctagtcacgcggtccccagcgtc
ggcgagaactctgttctaggcgttgggacggatataaggagcctcttcactgctcctagc
gcctctgcgctgcagaaggctcttggattcggagacgtctctcttctgaatcccattcta
gtccactgcaggacttccgcgaagccgttttacgcgattgtgcatagggtcacagggagc
attatagtcgactttgaaccggtgaagccttacgaagttcccatgacggctgctggtgcg
ttgcaatcttacaaactagctgcgaaagcgatcactaggctgcagtctttgcctagcggc
agcatggagaggctttgcgatacgatggttcaagaggtttttgagctcactggatacgac
agagtgatggcttataagtttcatgaggatgatcacggcgaagttgtctccgaggtgacg
aaacccggtcttgagccttatcttggtctgcattatccagccactgatatccctcaagcg
gctcggtttctttttatgaagaacaaagttcggatgatcgttgactgcaacgcaaaacat
gtgaaggtgcttcaagacgagaagctatcctttgatctcaccttgtgcggctctaccctt
agagcgccgcacacctgccatttgcagtacatggccaatatggattctattgcatctctt
gttatggcggttgtagttaacgaggaagaagatggagaagctactactacgcctcaaaag
agaaagaggctatggggtttggtggtttgtcacaacacaactccgaggtttgtcccgttt
cctctcaggtacgcctgcgagtttctagctcaagtgtttgcgatacacgttaacaaagag
gtggagctggagaaccagatcgtggagaagaacattctccgcacgcagacgctcttatgc
gatatgctgatgcgcgatgctcctctggggattgtctctcagagtcccaatataatggac
cttgtgaaatgcgacggagcagctcttttgtataaagaaaaagtatggaagcttggaaaa
actccaagcgagtttcatctacaagagatagctttttggttgtgtgaacaccacgctgat
tcaaccggtctaagcactgatagcttgcatgacgctgggttcccaggagctttggctctt
ggggattcagtatgcggaatggcggcggtgaggatatcttccaaagacatgattttctgg
ttccgttctcatacagctggtgaagtgagatggggaggtgcgaagcatgatccagatgat
agagatgacgcgaggagaatgcaccccaggtcatcgttcaaggcctttcttgaagtggtt
aagacgaggagtttgccttggaaggactatgagatggatgctatacattcattgcagctt
attctgaggaatgctttcaaggatggtgaagctaccgatgtgaatacgaatattattcac
tcgaagcttaatgatctgaagattgacggtatacaagaactagaagctgtgactagtgag
atggttcgtttgattgagactgctactgtgccgatattggcggttgattctgatgggttg
gttaatggttggaacacgaagattgctgagctgactggtcttcctgttgatgaagcgatt
gggaagcatctcctcacacttgttgaagattcttcggtggatatcgttcagaggatgtta
gagaatgcattagaaggaactgaggagcagaatgttcagtttgagatcaagacacatctg
tcaagaacggatgctggaccaataagtttagttgtaaacgcatgcgcaagcaaagacctc
cacgaaaacgtggttggtgtatgtttcgtagcccatgatctcaccgcacagaagaccgtg
atggacaagttcactcgtatcgaaggtgactacaaggccatcatccaaaacccaaaccct
ctgatcccgcccatattcggaaccgacgagtccgggtggtgcacggagtggaatccagca
atgtcaaagctaaccggcttgaagcgtgaggaggtggtggagaagatgctgttgggagaa
gtctttggaactcaaaagaagtcgtgctgtcgtctcaagaatcaagaagcgtttgtgaac
cttgggattgtgctgaacaatgctgtggtgacaagtcaggaagctgagaaagtgccgttt
ggtttttttacgagtggtgggaagtatgtggagtgtttgctgtgtgtgagtaagaagctt
gacagggaaggtccggtgactggggtgttctgtttcttgcaacttgctagttatgagctg
cagcaagcgcttcacgtgcagcgtctagctgagcgtactgcgctgaagagactaaaggct
ttggcttatataaaaagagagattcggaatccgttgtctgggatcatgtttgcaaggaag
atgatggaggggactgagttaggtcctgagcagagaaggatcttgcaaactagcggtttg
tgtgagaagcaactcagcaagattcttaatgattctgatcttgaaagcatcattgaagga
tgcttggatcttgaaatgaaagagttcaccttaaacgaagtgctgactgcttccacaagt
caagtaatgatgaatagcaacggaaagaacgtttgcgtaactaatgaaacaaaggaagaa
gtaatgtctgaaactctgtatggagatagtattaggcttcaacaagttcttgcagatatc
atgttgatggctgttaactttacaccatccggacgtcagctaactgtcacagcttccttg
aggaaagatcagcttgggagatcagtgcatcttgcttatttagagatcaggataacgcat
accggagctgggttaccagagtttttgctacaccaaatgtttgggagtgaggaagatgtg
tcggaggaagggttaagcttgatggttagcaggaaactggtgaagctgatgaatggagat
gttcagtacttgagagaagctgggaagtctagtttcattatcactgcagaactcgctgca
gcaagcaaatag
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