Brassica oleracea (wild cabbage): 106311707
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Entry
106311707 CDS
T04124
Name
(RefSeq) vacuolar protein sorting-associated protein 35C
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
106311707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
boe04131
]
106311707
Membrane trafficking [BR:
boe04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
106311707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Mef1
PH_PLEKHM2
Motif
Other DBs
NCBI-GeneID:
106311707
NCBI-ProteinID:
XP_013604421
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All DBs
Position
C8:27834869..27839781
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AA seq
790 aa
AA seq
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MIADDDEKWLAAATAAVKQNAFYMQRAIDSNNLKDALKFSAQMLGELRTSKLSPHKYYEL
YIRASDELRSLEMFFRDETGRGCSIAELYELVQHAGNILPRLYLLCTIGSVYIKSKDVTA
NDILKDLVEMCRAVQHPLRGLFLRSYLAQVTRDKLPSIGSEVEGDTETHMDALEFVLQNF
TEMNKLWVRMQHQGPTREKEKREKERNELRDLVGKNLHILGQLEGVDLVVYRDTVLPRIL
EQVVNCKDELAQCYLMDCIIQVFPDDFHLQTLDVLLGACPQLQPSVDIKTVLSGLMERLS
NYAASSVEALPNFLQVDAFSKLNHAIGKVVEAQVDLPASASVTLYLFLLKFTLHVHSDRL
DYVDQVLGSCVSQLSATGKLCDDKASKQIVAFLSAPLEKFNDVVTILKLTNYPRVMEYLD
HDTNKAMAIIIIQSILKNDTRIATADEVDAWFELIKGLIKDFDGLADNDEIDEEDFQEEQ
NSVARLVHFLYNDDPEEMSKIIFRIRKHILTGGPKRLPLTIPPLVFSALKLIRRMRGGDE
NPFGDDTSTPQKILQLLTETVEVLSDVSASELALRLYLQCAQAANDCELETVAYEFFTKA
YLLYEEEISDSKAQVTALRLIIGTLQRMRVFNVENRDILTHKATGYSAKLLKKPDQCRAV
YECAHLYWAEEGENLKDGERVVLCLKRAQKIADAVQKMANASRGASSTGFVSLYVELLNK
YLYFLEKGNPQVTGETIQSLAEIIRSETKKAEPGAGTYITSTLRYMEFQRQQEDGGMSEK
YLKIKMEWFE
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatcgccgacgacgatgagaagtggctcgctgccgccaccgccgccgttaaacaaaat
gctttctacatgcagcgcgcgatcgactccaacaatctcaaagacgcgcttaagttctct
gctcagatgctcggcgagcttcgcacttccaagctttctcctcataaatactatgaactc
tatattcgagcttctgatgagctgaggagtttggagatgttctttagggatgagacgggg
cgtggttgctccattgctgagctttacgagcttgttcagcacgccggtaacattttgcca
agattgtatcttctctgtaccataggatctgtatatatcaaatccaaggacgttactgcc
aatgatatactaaaggatcttgttgaaatgtgccgagctgttcaacatcccttgcgtggt
ctcttcttgagaagttaccttgctcaagtcactagggataagttacctagcattggttca
gaggtggaaggagataccgaaacacacatggatgctttagagttcgtgcttcaaaatttt
actgagatgaacaaactatgggttcgaatgcaacatcagggacctacccgggagaaggag
aaacgggagaaagaaaggaatgaactacgtgatcttgttggaaaaaaccttcatatactt
ggtcagttggaaggtgttgaccttgtagtttacagagatactgttcttcctagaatactg
gagcaggttgtcaactgcaaggatgaacttgcacagtgctacctaatggattgcattatc
caagtttttcctgatgactttcaccttcaaactctcgatgtattattaggtgcttgtcca
caacttcagccatctgttgatatcaagacagttctttcgggtctaatggaaagactttcg
aactatgctgcatctagtgtggaagcattgcctaatttcctgcaagtagatgccttttca
aagttgaatcatgccattgggaaggttgtagaagcacaggtggacttgccagcctcagca
tctgtaacattgtatttgtttcttctgaaattcactctccatgtccattccgatcgtcta
gactatgtggaccaagttttgggatcttgtgttagccaactctccgccacaggaaaactt
tgtgatgacaaggcatcaaaacagatcgttgcatttcttagcgctccattggagaagttt
aatgatgttgtaactattttgaagcttaccaactatcctcgagtaatggaataccttgac
cacgatacaaacaaagcaatggcaattattataattcagagcattttgaaaaacgatact
cgcattgctactgctgatgaggttgacgcatggtttgaactgataaagggacttatcaag
gactttgacgggctagctgataatgatgagattgatgaagaagatttccaggaagagcag
aactctgttgcacggttggttcactttctctacaatgatgacccagaggaaatgtctaag
ataattttcagaataaggaagcacatcctgactggaggacctaagcgtctacctcttacg
ataccaccacttgtcttttccgctctcaagttaattcggcgaatgcgaggtggagatgaa
aacccatttggagatgacacgtcaacaccacaaaaaattctacagctcttaacagagacc
gtggaagttctatcagatgtgtcggcatctgaattggcattgcgactctacttgcaatgt
gctcaggcagcaaatgactgtgaattagaaacagtcgcatatgagttcttcacgaaggca
taccttctgtatgaagaagaaatttcggattcaaaggcacaagtaacagcattacgttta
ataatagggacactacagcggatgcgtgtatttaatgttgagaacagagatattttgact
cacaaggcgacagggtactctgcgaaactcctcaagaagccagatcagtgtagagctgtt
tacgaatgtgcgcacctttactgggctgaggaaggcgagaacctgaaagatggagagagg
gttgtgctttgcctgaagagggcacaaaaaattgcagatgctgttcagaaaatggccaac
gcatcccgtggtgccagtagcaccgggtttgtgtctctgtatgtcgaactgctgaacaag
tatctctactttttggagaaaggaaatccacaggtaacaggcgaaacaatccagagctta
gctgaaataatcagaagtgagacgaagaaagctgagccgggcgcagggacatacataacc
agcactctgcgttacatggagtttcagagacaacaggaggatggtggcatgagtgagaaa
tacctgaaaatcaaaatggaatggtttgaatga
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