Brassica oleracea (wild cabbage): 106311768
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Entry
106311768 CDS
T04124
Name
(RefSeq) DNA-directed RNA polymerase I subunit rpa1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106311768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106311768
Enzymes [BR:
boe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106311768
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
106311768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
CIS_TMP
Med27
Motif
Other DBs
NCBI-GeneID:
106311768
NCBI-ProteinID:
XP_013604500
UniProt:
A0A0D3DU03
LinkDB
All DBs
Position
C8:31299845..31307720
Genome browser
AA seq
1643 aa
AA seq
DB search
MAQTTTEGASQVVESVRFSFMTEEDVRKHSVLQVTKPILLDNVGRPVPGGLYDPLMGPME
DDRSKCKTCDQRNLDCPGHCGRIELVRPIYHPLLFNLLFIFLQRTCFFCHHFMVKKEVVA
RCVSQLKLIMKGDVIAAKQLTLKPTDSSPGECEDSDMGKQRWTSLQFAEATDVINQFLRL
KSRKCESCKAKPPKLEKPIFGWVRLDGMSAIDIGANVMRGVKAKKSANSGEDSDDGDESG
ISGLHEVEDGAKKKKGKSSKAAKDYGDLKKASKRDLLPIEVKEILEGLWDNEYEFCSFIG
DLWKSGSEKMDYSMFFLGSVLVPPTKFRAPTKGGDSVTEHAHTAGLNKVLEANIALGNAC
TNKLGLSKIVSIWMNLQETVNVLFDSKTATVKSQREGTGICQLLEKKEGLFRQKMMGKRV
NHACRSVISPDPFIAVNDIGIPPCFALKLSYPERVTPWNVEKLRQAIINGPDVHPGATHY
SDKVSTMKLPPTKKARIAIARKLLSSRGVNTELGKTCDVNFECKTVYRHMQDGDVVLVNR
QPTLHKPSIMAHIVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRSEAYNIV
NANNQYARPSNGDPLRALIQDHIVSSVLLTKGDTFLDKEEFNQLLFSSGVTDMVLSSFSG
RSGKKVTQSASNAELLTVTPAILKPVPLWTGKQVITAVLNEITKGHPPFSVEKSTKLPVD
FFKCRSREAKSKSGESSKKRKKHDFNEDKLLIRKNEFVRGVIDKAQFADYGLVHTVHELY
GPNAAGNLLSVFSRLFTVFLQTQGFTCGVDDLIILKDVDEKRTEQLRECEGVGEKVLRKT
FGVDANAQIDPQDMKSRIERVLYEDGELALASLDRSVVSELNQCSGKGVMNDLLSDGLLK
TPGTNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRA
GGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTV
RDADGSIIQFQYGEDGVDVHRSSFIEKFQEMTLNQDMFLERCSEDMLSGSSSYITDLPIT
LKKGAEKFVEAMPMKERIASKMVRQEDLLKLVKSKFFASLAQPGEPVGVLAAQSVGEPST
QMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTNDDASQITDKL
RKITVADIIKSMEVSVIPFAVHGGEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMTVT
FLRKLEDAIETHMKMLLRIRGIKIEKDNGPKSGNETDNDDSDSGKKTGGDDDDDDDEGED
TEADDLGADAQKRKKQATDEQDYEESDDDEKNEPSSVSGVVDPEMDDDEDEDGEVSKEDT
PEEDNEDTLEAKKEVKNVQQENKKKKRQRFVSGEKDRHIFAEGKGKTFEVHFKFHKNEPH
ILLAQVAQKTAQKVYIQNLGKIERCTVANCGDPQVIYYGDNPKERAEISNEEKKASPALH
ASGVDFAGLWEFQDKLDVRYLYSNSIHDMLNTFGVEAARETIIREINHVFKSYGISVSIR
HLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEVDRLETPSA
RICLGLPALTGTGCFDLLQRMDL
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaccaccacagagggagcttcccaagtggttgaatccgttaggtttagcttc
atgacagaggaagatgtccgaaagcacagtgttcttcaagttacaaagcccatcttgctc
gataacgttgggagacctgtccctggtggtctctatgatcctcttatgggtccaatggag
gatgatagatcaaagtgtaaaacgtgtgatcagcgcaatttagattgcccaggacattgt
gggcgtatcgagcttgtccgtcctatctaccaccctttgctgttcaatctccttttcatt
tttttgcagaggacatgtttcttctgtcatcactttatggttaaaaaggaagtggttgca
agatgcgtctctcagctgaaactcatcatgaaaggtgatgtgattgccgctaagcagctc
actcttaaacccaccgattcatcaccaggggaatgtgaagattctgacatggggaagcag
agatggacatctcttcagttcgctgaagccactgacgtcatcaatcagtttcttaggttg
aagtcaaggaagtgtgagtcttgcaaagcaaagcctcctaaactagagaagcctattttc
ggatgggttcgcttggatggtatgtcagcgatcgacattggagctaatgtaatgcgaggg
gttaaggctaagaagtccgctaacagtggggaagattccgatgacggtgatgagagtggt
atcagtggattacatgaagttgaagatggtgctaaaaagaaaaaaggaaagtcttcgaaa
gcagctaaagactatggagatctcaagaaggcttctaaaagagaccttttaccgattgag
gtcaaggaaatcttagaaggtttgtgggataatgagtatgagttttgctccttcattggt
gatctttggaagagtggatctgaaaaaatggactattctatgttctttttggggagtgtt
cttgtgcctcctactaaatttagagctccaacaaaaggaggtgatagcgttacggaacat
gctcacaccgcagggctaaataaggtcttggaagccaatatagcccttggaaatgcctgt
actaacaaattaggtctatccaagatagtttccatatggatgaatcttcaagaaacagtc
aatgtcttgtttgatagcaagactgccacagttaaaagccaaagagagggtactggaata
tgtcaactgctggagaagaaagagggtctgtttcggcaaaagatgatgggaaagagagtg
aatcatgcttgcagatctgtgatatctccagatccttttatcgctgtcaatgacattgga
attcctccttgctttgctttgaaattgagctatcctgagagggtgactccttggaatgtt
gaaaagttaaggcaggctatcattaatggtcctgacgttcaccctggagcaacacactac
tctgacaaagtatctacaatgaagctgcctcctaccaaaaaagcacgaatagcaattgca
agaaagctgctgtcctcacgaggagtcaatacagaacttgggaaaacttgtgatgtcaac
tttgaatgtaaaactgtatatcggcatatgcaagatggcgacgtcgtccttgtcaatcgt
cagccaacgttacataaacctagtattatggctcacattgtccgtgttctcaagggggag
aaaacacttcgcctccactatgcaaattgcagtacatacaatgcagatttcgatggggat
gagatgaatgtccattttccacaagatgagatttcacgatctgaggcttacaatattgtc
aatgcaaacaaccaatatgccagaccttctaatggtgatccacttcgagctttaattcag
gaccacattgttagttcggttttacttaccaaaggggacacctttttggacaaagaagaa
ttcaatcagcttctcttcagttccggcgtgactgacatggtactcagttctttttccgga
cgatctggcaaaaaagtcacacaatcagcttctaatgcagagctgttgactgtcacgcct
gccattttgaaaccagtacctctttggacaggaaagcaggtcatcacggcagtgttaaat
gagataaccaaaggtcatcctccattcagcgtagagaaatctacaaaacttccggttgac
ttcttcaaatgtagatcaagagaagcaaaatctaaaagtggagaatccagcaaaaagagg
aagaagcatgattttaatgaagacaaactgctcatcagaaaaaatgaatttgtccgcggt
gtgattgacaaggctcagtttgcggactatgggttggttcatacagtgcatgagctctac
ggtccaaatgctgcaggaaacctgctttctgtttttagtcgtctcttcacagtcttcctt
cagactcaaggtttcacctgtggagttgatgatcttattattttgaaagatgtggatgaa
aagaggacggagcaacttcgagaatgtgaaggagttggtgaaaaagtactccgtaagacc
tttggcgttgatgctaatgctcagatagatcctcaggacatgaaatctagaattgagcga
gttctgtatgaggatggcgaacttgctttggcatctttggacaggagcgttgtaagtgag
ctcaaccagtgttcaggcaagggggtgatgaacgatttgctctcggatgggttgttgaaa
acacctggaacgaattgtatctctctgatgacaatatctggggctaagggtagtaaggtt
aacttccagcaaatttcttctcaccttggccagcaagatttagaaggaaaaagagttccc
cgaatggtttcagggaagacattaccttgcttccatccatgggattggtcacctagagct
ggaggttttattagtgacagattccttagcggtcttcgcccccaagaatactactttcat
tgtatggctggacgagaagggttagttgatactgcagtgaagacatcacgtagtgggtat
ctgcagagatgtttgatgaaaaatcttgagagcctgaaagtcaactatgattgcacagta
cgggatgctgatggatccatcattcagttccaatatggtgaagatggcgtggatgttcat
cggtctagcttcattgaaaagttccaagaaatgacattaaatcaagatatgttccttgaa
agatgtagcgaagacatgctatctggatccagtagctacataactgatcttcctattacg
cttaagaagggagctgagaagtttgtagaggcaatgcctatgaaagaacgtattgcttct
aaaatggtgagacaagaagatcttctgaagctagtgaagtcaaaattctttgcaagtctc
gcccagccaggggagcctgtgggtgtacttgctgcacaatctgtaggagagccatcaaca
cagatgacgttgaatactttccatcttgctggacgtggagagatgaatgtgacacttggt
attccacgtttacaagagatcttgatgactgctgctgcagacattaagacacccatcatg
acctgcccgttgctgaagggcaaaacaaatgatgatgcaagtcaaatcactgataagttg
aggaagattaccgtagcagatattatcaagagtatggaagtgtccgtcataccatttgca
gttcatgggggtgaagtttgcagtattcacaagcttaagatcaatctatacaagccagag
cattatccaaagcacactgatattaccgaagaagactgggaagagacaatgacggtcacg
tttctgaggaagctggaagacgctatagagactcacatgaaaatgctcttgagaatcagg
ggcataaagattgagaaagacaacggtccaaaatccggaaacgaaacggataatgatgat
tccgatagtggaaagaagactggaggtgatgatgacgatgatgatgatgagggagaggat
acagaggctgatgatcttggtgcagatgcacagaaacggaagaagcaagcaacagatgag
caggattatgaggagagtgatgacgatgagaagaatgaaccgtcttcagttagtggagtg
gttgaccctgagatggatgatgatgaagatgaggacggagaagttagcaaggaagatacc
ccggaggaggataatgaagataccttggaagcgaagaaagaggtgaagaatgttcaacaa
gagaataaaaaaaagaagagacaaagatttgtcagtggtgaaaaagacagacacatcttt
gctgaaggcaaaggaaagacatttgaggtccacttcaagtttcataaaaatgagcctcat
atattacttgctcaggttgctcaaaaaacagcgcagaaagtttacatccagaaccttggg
aagatcgaacggtgcacggtagccaactgtggtgatcctcaagtgatatactacggagac
aatccaaaggagagagcagagatctccaacgaagaaaagaaagcctcaccagctctccac
gcatcaggagttgattttgctggtctctgggagtttcaagacaagcttgacgtcaggtac
ttgtacagcaacagcatccacgacatgctaaacacttttggagttgaagcagctagagag
acgatcatcagggagataaaccacgttttcaaatcgtacggtatctcagttagcatcagg
cacttgaacctcatcgcggattacatgacgttctctggtgggtaccgtccaatgagccgt
atgggaggaattgcagaatcaacttctccgttctgcagaatgacgtttgagacagccact
aagtttattgttcaagcagctacttatggagaagtggataggcttgaaactccctcagct
agaatatgtcttggcttgcccgctcttacgggaacaggttgcttcgacttgttgcagaga
atggatctctga
DBGET
integrated database retrieval system
