Brassica oleracea (wild cabbage): 106311850
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Entry
106311850 CDS
T04124
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
106311850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
boe04121
]
106311850
Ubiquitin system [BR:
boe04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
106311850
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
106311850
NCBI-ProteinID:
XP_013604619
UniProt:
A0A0D3DV78
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Position
C8:complement(33639430..33642483)
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AA seq
595 aa
AA seq
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MYKRAALSFPEEVLEHVFSLVHVDKDRNSVSLVCKSWYEIERWCRRRVFIGNCYAVSPAA
VIRRFPRARSVELKGKPHFADFNLVPEGWGGYVYPWIEAMSASYAWLEEIRLKRMVVSDE
CLELIAKSFKNFKVLVLSSCDGFSTDGLAAIASTCRNLKELDLRESDVDDVSGHWLSHFP
DSYTSLVSLNISCLVSEVSFSALERLVCRSPNLKSLKLNRAVPLEKLATLLQRAPQLEEF
GTGVYSAEVRPDVLSGLSVAISGCKKLKWLSGFWDALPAYLPAVYSVCSGLTTLNLSYAT
VQSYDLVKLLSQCPKLQRLWVLDYIEDDGLEMLALTCKDLRELRVFPSEPFVMEPNVALT
EQGLVSVSAGCPKLESVLYFCRQMTNAALVTIARNRPNMTRFRLCIIEPKAPDHLTLEPL
DVGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC
ESLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCPVSFGACKLLGQKMPKLNVEVIDE
RGPPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQQHSAMRFSRQIITTNGL
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgtataagcgagcggccttatcgtttcccgaggaagttctggagcacgtgttctcctta
gtccacgtggacaaggacaggaactcggtgtctctggtgtgcaagtcgtggtacgagatc
gagcggtggtgcaggaggagagtcttcatcgggaactgctacgccgtgagcccggcggcg
gtgatacggaggttcccgagggcgagatccgtggagctgaaggggaagccgcacttcgcg
gacttcaatctggtgccggaggggtggggagggtacgtgtacccgtggatagaggcgatg
tcggcgtcgtacgcgtggctggaggagataaggctgaagaggatggtggtgagcgacgag
tgcttggagcttatagccaagtcgtttaagaattttaaggtgctcgtgctttcctcgtgc
gatggattctccacggatgggctcgctgctatcgcttccacttgcaggaatctgaaagag
cttgatttgcgtgagagtgatgtcgacgacgttagcgggcactggcttagccacttccct
gattcatacacttctttggtatcgctcaatatctcatgcttagtctccgaggtcagtttc
tctgctctggaaaggctggtgtgtaggtctcccaacctcaaatcacttaagcttaaccga
gctgttcctcttgagaagctggctactctacttcaaagagctcctcagctggaggaattt
ggcaccggtgtgtacagtgctgaagtgcgtccggatgtgctctctggtttgtctgtagct
atctctgggtgcaagaaactgaagtggttatctgggttttgggatgctcttcctgcgtat
cttcctgcagtttattcggtttgcagtggacttacaactttgaacctgagttatgcaaca
gtccagagctatgatcttgtcaagcttcttagtcaatgtcctaaattgcagcgcctctgg
gtgttggactacatcgaggatgatggtcttgaaatgcttgctctaacctgcaaggacctt
cgagagctgagggtgtttccgtccgagccttttgtgatggagccaaacgttgcgttgaca
gaacaggggcttgtctccgtctccgcaggctgtccgaaactagagtcggttctctacttc
tgccgtcaaatgaccaatgctgcgctggtaaccattgctaggaaccgtcccaacatgacc
cgcttccgattgtgcatcattgagccgaaagcccctgaccatctgactctagagccactg
gatgtgggatttggagccatagtggagcactgcaaagatctccggcgtctctccctgtcg
gggctgttgaccgacaaggtcttcgagtacattgggacgtatgcaaagaagatggagatg
ctctcagtggcgtttgcaggagacagtgacttggggatgcatcatgttctgtcagggtgc
gagagcttgaggaagctagagataagggactgcccctttggagacaaggcgcttttggca
aatgcttcgaagctggagacaatgcgatctctttggatgtcttcgtgtcccgtgagtttt
ggagcctgcaagttgttaggacagaagatgccaaagctcaatgtggaagtgatcgatgaa
aggggtccgcctgactcgagacccgagagctgccctgttgaaagagtgttcatataccga
acagtggcgggtcctcggtttgacatgcctggtttcgtctggaacatggaccaacaacac
tcagcaatgaggttttccaggcaaatcatcactactaacgggttatag
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