Brassica oleracea (wild cabbage): 106311982
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Entry
106311982 CDS
T04124
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106311982
03041 Spliceosome [BR:
boe03041
]
106311982
03036 Chromosome and associated proteins [BR:
boe03036
]
106311982
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106311982
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106311982
mRNA cycle factors
Common to processing body (P body) and stress granule
106311982
Spliceosome [BR:
boe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106311982
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106311982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106311982
NCBI-ProteinID:
XP_013604796
UniProt:
A0A0D3DU69
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All DBs
Position
C8:31674112..31677205
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AA seq
640 aa
AA seq
DB search
MSSSWADVSESERPPPSGWGGGGYGDSRPSRTNYVPPHLRSRPASSDFAAPSHGNERGGC
GGRGGRGSGYVGRGGGGGGGWSNRSGVWDRRDTETNPFGNDGNAEPPAVNELENNTGINF
EAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDL
MACAQTGSGKTAAFCFPIISGIMKEEEHVERPRGVYPLAVILSPTRELACQIHDEARKFS
YQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVKYLALDEAD
RMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGS
STDLIVQRVEFVHGSDKRSHLVDLLHAQRDNGNQGKQALTLVFVETKKGADSLENWLCIN
GFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD
YVHRIGRTGRAGNSGLATAFFNDNNTSMAKPLAELMQEANQEVPDWLSRYASRASFGGGK
NRRSGGRFGGRDFRRESGGYGGGPGGGYGGGPRGGYGGGPGGGYGGGPGGGYGAMQGGYG
TVPGGYTYIPYGRGGGAYYGGGYGTVPNQGYGPGVASAWD
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatcatgggctgatgtttctgaatcggagagaccaccaccatctggttggggt
ggaggtggttacggtgactctcgtccgtccagaaccaactacgttcctccgcatcttagg
agccgtccagcgtcttcagactttgctgctccttcacatggtaacgagcgtgggggatgc
ggtggtagaggaggtcgtggctcaggctatgtaggtagaggaggaggtggtggtggtggt
tggagtaacagaagtggagtttgggaccgtagggacactgaaacgaacccgtttggtaac
gatggcaatgcagagccgccggctgttaacgagctggagaacaacacaggcatcaacttt
gaagcgtatgaagatattcccatcgagacgagtggggataatgtgccacctcctgttaat
acatttgcggagattgatctcggagaggctctgaatctcaatattcagaggtgcaagtac
gtgaagccgacccctgtgcagcgtaacgctattcctatattagctgctgggagggatttg
atggcttgtgctcagacagggtctgggaagacggctgcgttttgctttccgattattagt
gggattatgaaggaggaggagcatgttgagagaccgcgtggtgtctatccacttgctgtt
attctctcaccaactagggagttggcttgccagatacatgatgaagcgagaaagttctca
tatcagactggtgtgaaggttgtggttgcttatggaggaacaccagtcaaccaacagata
agggagcttgaaaggggagtcgatattcttgttgcaacacctgggagattaaatgatttg
cttgagagaggtagagtctcactacagatggtgaaatacttagcacttgatgaggcggac
aggatgctggacatgggttttgaaccacaaatcaggaagattgttcagcagatggacatg
cctcctcctggtgtccggcagacgatgctgttcagtgctacatttcctagggagatacag
agacttgcatctgattttctttcaaattacatatttctggctgttggaagagtggggtca
agtacggatttgattgtccagagagtagagtttgtccacggttctgacaaaagaagccat
ctcgtggaccttcttcatgctcagagggataatggtaaccaaggaaagcaagctttgact
ctagtatttgtggagacaaagaagggagctgactcgttggagaattggttgtgcattaat
ggattcccagctacgaccatccacggtgataggtcacaacaggaaagagaagtggcgctg
agatcattcaaaaccgggcggacacctattctggttgcaacagacgtggctgcacgtggg
cttgacattccacacgttgctcatgtggttaactttgatctgccaaacgacatcgacgac
tacgtccaccgtattggacgaacaggacgtgcaggcaattcagggttggcaactgctttc
ttcaacgacaacaacacatcaatggccaagccactcgctgagctgatgcaagaagcaaac
caggaggtccctgactggctgagtcggtacgcatctcgtgcttcatttggaggtggtaag
aaccggcggtctggtgggcggtttggaggccgtgacttcaggagagaatctggtggctat
ggaggcggtcccggtggtggctatggaggcggaccccgtggtggctatggaggcggaccc
ggcggaggttatggaggcggtcccggtggtggctatggagcaatgcaaggtgggtatggg
acggttcctggtggttatacttatataccttatggtagaggaggtggtgcttactatggt
ggaggatatggaactgttcctaaccaagggtatggtcctggagtggctagtgcttgggac
taa
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