Brassica oleracea (wild cabbage): 106312071
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Entry
106312071 CDS
T04124
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106312071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106312071
03009 Ribosome biogenesis [BR:
boe03009
]
106312071
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106312071
Spliceosome [BR:
boe03041
]
Complex A
U2 snRNP components
U2 related factors
106312071
Complex B
106312071
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
106312071
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
90S particles
Helicases
106312071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
ABC_tran
nSTAND3
SRP54
T2SSE
AAA_7
Flavi_DEAD
PhoH
AAA_30
TsaE
NACHT
UvrD-helicase
AAA_29
Motif
Other DBs
NCBI-GeneID:
106312071
NCBI-ProteinID:
XP_013604902
UniProt:
A0A0D3DV24
LinkDB
All DBs
Position
C8:complement(33355789..33358953)
Genome browser
AA seq
718 aa
AA seq
DB search
MGTERKRKVTLFDVMDNPSAPKVAKFNGLGDVGINKWNGKPYSAKYYEILEKRRTLPVWL
QKEEFLSTLKNNQTIILVGETGSGKTTQIPQFVIDAVDAESSDRKWLVACTQPRRVAAMS
VSRRVADEMDVAIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADPLLERYKVIILD
EAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVE
IFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVGNLGDQVG
PVKVVPLYSTLPPAMQQKIFDPAPEPVTKGGPPGRKIVVSTNIAETSLTIDGIVYVIDPG
FAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYP
EILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTRTGE
IMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFLRPREYQKAADEAKAKFAHI
DGDHLTLLNVYHAFKQNNEDPNWCYENYINNRAMKSADNVRQQLVRIMSRFNLKICSTDF
NSRDYYINIRKAMLAGYFMQVAHLERAGSYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYV
LTTRNFIRTVTDIRGEWLVDVAPHYYDLTNFPNCEAKRVLEKLYKKREREKADSKNRK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagagaaagaggaaagtcaccttattcgatgtcatggacaatccatcagct
ccgaaggtcgccaaattcaatggtctcggcgacgttggaatcaacaaatggaacgggaaa
ccgtattcagctaagtactacgagatacttgagaaacggaggactctgccagtgtggttg
cagaaagaggagttcctcagtacgttaaaaaacaatcaaacgataattctcgttggagag
actggtagtggtaaaaccactcagattccacagtttgttattgatgctgttgatgctgag
agttcggataggaagtggttggttgcttgcacacagcctcgtagagttgctgccatgtct
gtgtcccgtcgtgtcgctgatgagatggatgttgctattggggaagaagttggttacagc
attcgtttcgaggattgtagcagccccagaacggtcctcaagtacttgactgatggtatg
cttctgagagaagcaatggcagaccctcttctagagagatacaaagtgattattctcgac
gaggctcacgagagaactctcgccacggatgtactctttggtcttctgaaagaggtgttg
aggaatagacctgatctcaagctggttgtcatgagcgcaactctagaagccgaaaagttt
caagagtatttcagcggcgcgcctctgatgaaggttcccggtaggcttcaccccgtggag
atcttctacactcaggagcctgagagagactacctcgaggctgctattaggactgttgtg
cagatacacatgtgcgagcctcctggtgatattcttgtcttcttaactggagaggaggag
atcgaagacgcatgccgcaaaatcaacaaagaggtcggtaatctcggcgatcaagtgggg
cctgtcaaagtcgtgccactgtactcgactctcccgccagcgatgcagcagaagatattc
gatcctgctccagagcctgtgacaaaaggtggtcctcctgggagaaagattgtggtgtcg
accaatattgccgagacctctctaaccattgatgggattgtctacgtcattgaccctggc
ttcgccaagcagaaggtctacaacccccgtatccgtgttgagtcattgcttgtgtcgccg
atatcaaaggcgagcgctcaccagagatcaggtcgtgccggtagaacgcggcccggaaag
tgtttcaggctttacacggagaagagtttcaacaatgacttgcagccgcagacgtatcct
gagatattgaggtcgaaccttgcgaacacggtgctgacactgaagaaactggggatagac
gacttggtgcactttgattttatggatcctcctgcgcctgagacactgatgcgagccttg
gaggttttgaattatttgggagcactggatgatgaaggaaacttgacgaggacgggtgag
attatgagcgagttccccttggatccgcagatggcaaagatgctgattgtcagtcctgag
ttcaactgctcaaacgagatcctctccgtttcggcaatgctatcagtaccgaattgcttt
ctacggcctagagagtatcaaaaagcagcagatgaagctaaagccaagtttgcacacatt
gatggagaccacctcacgttgctgaacgtctaccacgctttcaagcaaaacaatgaagac
ccgaactggtgctatgagaactacatcaacaacagggcaatgaagtctgcggacaatgtt
agacagcagctggtcaggataatgtcaaggttcaatctgaagatttgcagcactgatttc
aacagccgcgactactacatcaacataagaaaggccatgcttgccggttatttcatgcaa
gtggcgcacctagaacgcgctgggagttacttgaccgtcaaagataaccaagtggttcat
ttacatccatccaattgcttggatcacaaaccggagtgggtaatctacaacgagtatgtt
ttgactacaaggaacttcatcagaactgtgactgacattcgcggtgaatggctagtagac
gtagctcctcattactacgatcttaccaacttccccaactgtgaggcgaaacgtgtcctc
gagaagctttataagaaaagagaaagggagaaggcagacagcaagaaccgcaagtga
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