Brassica oleracea (wild cabbage): 106312101
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Entry
106312101 CDS
T04124
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03013
Nucleocytoplasmic transport
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106312101
03015 mRNA surveillance pathway
106312101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106312101
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106312101
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
106312101
NCBI-ProteinID:
XP_013604940
UniProt:
A0A0D3DPV8
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Position
C8:complement(21465867..21474977)
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AA seq
386 aa
AA seq
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MAKPSRGRRSPSVSGSSSRSSSRSRSSGSRSLSRSRSLSSSSSPSRSVSSGSRSPPPRGK
SSSGPARRGRSPLPPPQSKGASSPFKKAAPIQESLVLHVDSLSRNVNEGHLKEIFGNYGE
VVHVELAMDRAVNLPKGYAYVEFKARADAEKALLFMDGGQIDGNVVKAKFTLPARQKLSP
PPKPVSTAPKREAPKSDSAAIEKDGPGRPRETSPRRRSPLPRRLPDSPPRRRPSPPIRRR
GDTPPRRRAASPPRGRSPSSPPPRRQRSPPRGSPRRIRGFPVRRRSPPPLRRRSPPRRLR
SPLRRSPIRRRSRSPIRRPGLSRSRSISPRRGRGPAGRRGRSSSSYSSSPSPRRIPRKIS
RSRSPKRPLRGKRSSSSSSSPPSRKT
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaagccgtggccgtcgttcgccttccgtctccgggtcttcatctcggtcc
agctccagatctcgttcgagtgggtccaggtctctttcccgttcgagatcgctctcttct
tcttcgtctccttcgcggagcgtcagttcagggagtcgtagtcctccaccccgtggaaaa
agttcttctgggcctgctaggcgaggtcgctctccgcttcctcctccacagtctaaagga
gcctcttcaccctttaagaaagccgcacctattcaagaatctcttgttctccatgttgat
tctcttagcaggaatgtgaatgaaggccatctcaaagaaatatttggcaattatggtgaa
gttgtacacgtagaacttgcgatggatcgagctgttaatcttccaaaaggatatgcttat
gttgagttcaaggcaagagctgatgctgaaaaggctctgctgtttatggatggtggccaa
attgatggaaatgttgttaaagccaagttcacactaccagcgcgtcagaaactatctcca
cctcctaaacctgtctcaactgcaccaaagagagaggctccaaaatctgatagtgctgcc
attgagaaagatgggcccgggcgcccaagagagacttctccaagaaggcgatcacctcta
cctaggaggttacctgattctccccctcgccggaggccgagccctcctatccgccgtcgt
ggtgatacaccgcccagacgcagggcagcatcgccacctagaggccgttctccatcttct
ccacctccaagaagacagagatctcctccaaggggctcccctagaagaatccgcggcttt
cctgttcgaagacggtctcctcctcctctaaggcgaaggtcacctccaaggagactacgc
agtcctctcagaagatctccaatccgcaggcgtagccgatccccaattcgtaggcctggt
ctctctcgttcaaggtccatctcaccccgcaggggacgaggtccagctgggagacgtgga
aggtcatcttcttcttactctagttcgccaagtcccagaaggattcctaggaagatttcg
aggagccgcagtcctaagaggccactgagaggaaaaagaagcagcagtagcagcagctca
ccgccttctcgcaaaacataa
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