Brassica oleracea (wild cabbage): 106312405
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Entry
106312405 CDS
T04124
Name
(RefSeq) probable pectate lyase 13
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106312405
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106312405
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106312405
NCBI-ProteinID:
XP_013605374
UniProt:
A0A0D3DT66
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Position
C8:29468031..29471602
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AA seq
503 aa
AA seq
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MLLPHFSTTISLLCIFFFTLLQATNLTLPHQHPSPDSVALHVVSSINASLSRRQLSSSSS
SCRTGNPIDDCWRCTSSDWSSNRQRLADCSIGFGRGTLGGKNGKIYVVTDSSDNNPSNPS
PGTLRYAVIQEEPLWIVFSSNMLIRLKHELIINSYKTIDGRGSAVHITGNGCLTIQYVQH
VIIHNVHIYDCKPSGGAVVAATPTKSGRRGRSDGDGISIFGAQKIWIDHCSMSHCTDGLI
DAVMGSTAITISNNYFAHHDEVMLLGHDDSYGPDTGMQVTIAFNHFGQGLVQRMPRCRRG
YIHVVNNDFTSWKMYAIGGSGNPTINSQGNRYIAPSDPSAKEVTKRVDSKDDGEWSNWNW
RTEGDLMENGAFFVASGGGVSALYSKASSVEPKASALVDQLTRNAGVFGGPRDDQGQTGD
SYSGYGGGGGGGGSGGGGGGSSGSDGGTSAIGGTTRGSSTSSSDDSNFFGMIFGSNAPPR
PRLTLLFCLIMICVMSISSLLLL
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgctgcttcctcacttctccaccaccatttccctcctctgcatcttcttcttcacactc
ctccaagccactaatctcactctcccccaccagcatccttcccctgactccgtcgctctc
cacgtcgtaagttcaatcaatgcatccctctcacggagacaactctcctcctcctcctcc
agttgccgcaccggcaacccaatcgacgactgctggcgctgcacctcctcggactggtcc
tccaaccgccaacgcctcgccgactgctccatcggcttcggccgcggcacactcggcggc
aaaaacggcaagatctacgtcgtcacagactcctccgacaacaacccatcaaacccatcc
ccaggaactctccgctacgccgtcatccaagaagagcccctctggatcgtcttctcctcc
aacatgctcatccgcctcaaacacgaactcatcatcaacagctacaaaaccatcgacggc
cggggctccgccgtccacatcaccggcaacggctgcctgaccatccagtacgtgcaacac
gtcatcatccacaacgtccacatctacgactgcaaaccctcgggaggcgccgtggtcgcc
gcgacgccgacgaaatccgggaggcggggcagatcggacggcgacgggatctccatcttc
ggagctcagaagatctggatcgaccactgctccatgagccattgcaccgacgggcttatc
gacgcggtgatggggtccacggcgattacgatatcgaataactacttcgcgcatcatgat
gaggtgatgctgttgggtcatgacgatagttatggcccggacacggggatgcaggtgacg
attgcgtttaaccatttcggacaggggcttgttcagaggatgccgaggtgtcggagaggg
tatatacacgtggtgaataatgatttcacgtcgtggaagatgtatgcgattggtggaagt
ggtaatcctacgattaacagtcaggggaatcgttacattgctccttctgatcctagcgcc
aaagaggtgacgaagcgagtggattcgaaggacgatggagagtggtcgaattggaattgg
agaactgaaggagatctgatggagaacggagctttctttgtggcgtctggtgggggagtg
agcgcattgtactctaaagcttcgagtgtggagcctaaagcttcggctcttgtagaccag
ctcactcgaaatgctggcgtttttggtggtcccagggatgatcaaggtcagactggcgat
tcttattctggttatggaggtggtggtggtggtggtggtagtggtggcggcggaggtgga
agcagcggcagcgatggaggaactagtgctattggcggtactacgagaggaagtagcacc
agcagcagcgatgacagcaatttcttcgggatgatcttcggaagcaatgcaccgcctcga
ccacgtttaacattattgttttgtttgataatgatttgtgtaatgtcaatatcaagtcta
ttattgttgtag
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