Brassica oleracea (wild cabbage): 106312472
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Entry
106312472 CDS
T04124
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106312472
03041 Spliceosome [BR:
boe03041
]
106312472
03036 Chromosome and associated proteins [BR:
boe03036
]
106312472
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106312472
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106312472
mRNA cycle factors
Common to processing body (P body) and stress granule
106312472
Spliceosome [BR:
boe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106312472
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106312472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106312472
NCBI-ProteinID:
XP_013605465
UniProt:
A0A0D3DU66
LinkDB
All DBs
Position
C8:31654411..31657712
Genome browser
AA seq
612 aa
AA seq
DB search
MSTSWADVADSDNAASRAKPAYVPPHLRNRQSEPAAPLPGNERGGYGGQPSRWAPGGGGG
GGGGGGYRADAGRTGYGYGGRGTTGGGGGWNNRGGGGGGGWDREVNPFGDDVDLEPAFTD
QENTGINFDAYEDIPIETSGGNVPPPVNTFAEIDLGEALNLNIRRCKYVRPTPVQRHAIP
ILLAQRDLMACAQTGSGKTAAFCFPIISGILRDQNPQRPRGSRTVYPLAVILSPTRELAS
QIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQM
IKFLALDEADRMLDMGFEPQIRKIVEEMDMPPRGMRQTMLFSATFPSEIQRLAADFLANY
IFLAVGRVGSSTDLIAQRVEFVHESDKKSHLMDLLHAQRETGNHDKQSLTLVFVETKRGA
DSLENWLCMNDFPATTIHGDRTQQEREVALKSFKSGRTPILVATDVAARGLDIPHVAHVV
NFDLPNDIDDYVHRIGRTGRAGKSGVATAFFNEKNAQLARQLAELMQEANQEVPEWLTRY
ASRASFGGGKKRSGGRFGGRDFRREGSYGGRGGGSGGGGNDYYGGGGGGYGGGGYGGAPS
GGYGGQVTSAWD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatcatgggcagacgtggctgattcagacaacgccgcttccagggccaaacct
gcttacgttccccctcatttaaggaacagacaatccgagcctgctgctcctttgccagga
aatgaacgtggtggatacggtggtcaaccatctcgctgggctcctggcggtggcggtggc
ggtggaggtggaggtggttatagggctgatgcagggcgtaccggctacggttacggcgga
cgaggaactactggcggtggtggtggttggaacaacagaggtggaggaggaggaggagga
tgggaccgtgaagtgaatccctttggagatgatgttgatctagagcctgccttcaccgat
caggagaacaccggcattaactttgacgcctatgaagatatccccattgagaccagcggc
ggtaacgtgcctcctcctgtcaacacgttcgcggagattgatctcggggaggcgttgaat
ctcaacatcaggaggtgcaagtacgtgaggccgacgccagtgcagcgtcacgcgattccg
atcctgcttgctcagagggatttgatggcgtgtgctcagacagggtctgggaagaccgct
gccttttgctttccgatcattagtgggatcctgagagatcagaatccgcagaggcctcgt
ggctcgcggactgtttaccctcttgctgttatcctctcgccaacaagggagctggcaagc
cagatacatgatgaagccaaaaaattctcttaccaaactggtgtgaaggttgttgttgct
tatggaggaacacctattaaccagcagctaagggaactggagagaggagttgacatcctt
gtggcaactcctggccggttgaatgatttgctagagagagctagagtctcgatgcagatg
attaagttcttagctcttgatgaagcggacaggatgctggacatgggttttgagccacaa
attagaaagatcgttgaagagatggacatgcctccacgtgggatgagacaaacaatgctg
tttagtgctacgttccctagcgagatccagagactcgctgctgattttctggcgaactat
atatttttggctgtgggaagggtgggttcaagcactgacctaattgctcaaagggttgag
ttcgtacacgagtctgacaagaaaagccatctcatggacctgctacacgcccagagagag
actggcaaccatgacaagcaatcattgacattggtgtttgtggagactaagaggggagcc
gactcattggaaaactggttgtgcatgaatgactttccagcaaccaccattcacggtgac
agaacacaacaggaaagagaagtggcactgaagtccttcaaaagtgggaggacacccatt
ctggtcgcaacagacgtggcagcacgtggtctcgacattccacacgtggctcatgtggtt
aacttcgatctaccaaatgacattgatgactatgttcaccgcatcgggagaacaggacgt
gcaggcaaatccggggtagctaccgctttctttaatgagaagaatgcacagctggctagg
cagctcgctgagctgatgcaagaagccaatcaagaggtgcctgagtggctcacgcgatac
gcttcacgtgcttcatttggcgggggtaagaaacggtctggtggaaggtttggtggccgt
gacttcagaagggaaggctcttacggcggtaggggaggaggcagtggtggcggtggaaat
gactactatggtggaggaggaggaggctatggtggcggtggatatggtggtgcaccaagt
ggtggctatggtggacaagtgaccagtgcgtgggattag
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