KEGG   Brassica oleracea (wild cabbage): 106312820
Entry
106312820         CDS       T04124                                 
Name
(RefSeq) splicing factor U2af large subunit B isoform X1
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106312820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:boe03041]
    106312820
Spliceosome [BR:boe03041]
 Complex A
  U2 snRNP components
   U2 related factors
    106312820
 Complex B
    106312820
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_occluded
Other DBs
NCBI-GeneID: 106312820
NCBI-ProteinID: XP_013605936
LinkDB
Position
C1:27849461..27853209
AA seq 581 aa
MNYEGNGDSVTVATDDNNDNENYIARESSPFKSLGSEDSKSRDSHDLDKDSSRSREKDKA
KGRDKDRDRDREKSRDRDRERDRHRRDRHRDRSRERNGKRERERDDLDDDDDDDHYRSRH
RHRSSRDRDREERHRRRSRSRSRSRSERRSRSEHRRRSEHRSRSRSRSRSRSKSKRVSGF
DMAPPASAMLAATAVAAAAGQVPSVPATASIPGMFPNMLAMVPGQQMGALPLLPMQAMTQ
QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVE
MRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAAALGPSQPNPSLNLAAVGLSSGST
GGLEGPDRIFVGGLPYYFTEEQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVFQDPLV
TDIACAALNGIKMGDKTLTVRRAVQGVIQPKPEQEEVLLHAQQQIALQRLMLQPGSTPTK
IVCLTQVVTADDLADDEEYEDIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLE
YADVDGAAKARSGMNGRKFGGNQVVAVYYPENKFAQGDYEG
NT seq 1746 nt   +upstreamnt  +downstreamnt
atgaattacgaaggtaacggagatagtgtcactgtcgccaccgatgacaataacgacaac
gagaactacatagctagggagagctcgccattcaagtctcttggtagcgaggactccaag
tctcgagattctcatgatctggataaggattcttcaagaagcagggagaaggacaaggca
aaggggcgtgataaagacagggacagagatagggagaagagcagggatagagatagggaa
cgcgatcgccatcgtagagatcgtcatagggaccgtagcagagaacgtaatgggaaaagg
gaacgtgagagagatgatctcgatgatgatgatgacgatgatcattacagaagtcgacac
cgtcacaggagctctcgcgatcgagatagagaggagagacacaggcgacgctcacgctct
cgctccaggagccgctctgaacgtaggtcaagatccgagcataggcgtaggtctgaacat
agatcacgttcacgctcacgctcacgctcacggtccaagagcaagagggtaagtggattc
gatatggcgccccctgcttctgcaatgctagctgctactgctgttgctgccgcagcaggc
caggttcctagtgtgccagctactgctagtattccagggatgttccccaacatgcttgca
atggtccctggtcagcaaatgggagcgcttcctttactgccaatgcaggcaatgactcag
caggcaactaggcatgctcgacgagtttatgttggtggccttccacccactgcaaatgaa
cagtcggttgcaactttctttagccaagtgatggcggcgattgggggaaacactgctggg
ccaggcgatgcggtggtcaatgtttacataaaccatgaaaagaagttcgcttttgtggag
atgagatctgttgaggaggctagtaatgcaatggcactagacggaattatattagagggg
gttcctgtaaaggtgaggaggccaactgactataacccgtcgcttgctgcagctcttggc
ccgagccagcctaatcccagtctcaatttggcggctgttggattgtcttcggggtctacc
ggtgggcttgagggtccggaccgcatttttgttggtgggcttccttattacttcacagaa
gaacagatcagggagctcttggagtcttttgggcccctgagaggttttaacttggttaaa
gacagggaaactggaaactcgaagggatatgctttttgtgttttccaagatcctttagtg
acagatattgcttgtgccgctctaaacgggattaagatgggtgataagacacttacagtg
aggcgtgcagtccagggtgtgattcaacctaaacctgagcaagaggaagtattacttcat
gctcaacagcagattgctttgcagaggcttatgctacaaccgggaagcacgccaaccaag
attgtatgtttgactcaagtggttacagctgatgatcttgcagacgatgaagaatatgaa
gacataatggaggacatgagacaagaaggtggaaaattcggtaacctggtgaatgttgtg
attccgaggcccaatcctgatcatgatccaacaccaggagttggaaaggttttcttagag
tatgcggatgtagatggcgcagcaaaggccagatcgggaatgaacggaagaaaatttgga
ggaaaccaagtggttgctgtgtattaccccgagaacaagtttgcacaaggcgactacgaa
ggctga

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