Brassica oleracea (wild cabbage): 106312883
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Entry
106312883 CDS
T04124
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03013
Nucleocytoplasmic transport
boe03015
mRNA surveillance pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106312883
09122 Translation
03013 Nucleocytoplasmic transport
106312883
03015 mRNA surveillance pathway
106312883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106312883
03041 Spliceosome [BR:
boe03041
]
106312883
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106312883
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106312883
Spliceosome [BR:
boe03041
]
Complex C
Other components
EJC/TREX
106312883
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106312883
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
106312883
NCBI-ProteinID:
XP_013606020
LinkDB
All DBs
Position
C9:complement(50522989..50525866)
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AA seq
344 aa
AA seq
DB search
MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALILCHTRELAYQICNEFVRFSTYLPD
TKVSVFYGGVNNKIHKELLKNECPHIVVGTPGRVLGLARDKDLSLKNVRHFILDECDKML
ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL
VQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAGELNKLLIECNFPSICIHSGMS
QEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG
TKGLAITFVASASDSEVLNQVQDRFEVDIKELPEQIDTSTYMPS
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggatgttatctgccaagcaaaatctggtatggggaagactgctgtctttgtgctttcg
actcttcaacagattgagccgtctcctggccaggtgtctgcacttatcttgtgtcataca
agggagttagcttaccagatctgcaatgaatttgtgcgattcagtacgtatctgcccgat
acaaaggtttcagtgttctatggaggagtcaacaataaaattcacaaagaattgctgaag
aatgaatgccctcacattgttgttggaacacctggtcgggtccttggactcgccagggac
aaagatctctctttgaagaatgtgaggcattttattcttgacgagtgtgataaaatgctc
gagtctctcgacatgcggagggacgtgcaggagattttcaagatgacacctcacgacaaa
caagtcatgatgttctcagcaacgctcagcaaagagatacgcccagtctgcaagaaattt
atgcaagatccaatggaaatatatgttgatgatgaagccaaactgactcttcatgggctt
gtccagcactacatcaaactgagcgagatggagaagaaccgcaagttgaatgatcttctt
gacgcattggacttcaatcaagttgtcatatttgtgaagagcgttagcagagctggggag
ctgaacaagttgcttattgaatgcaatttcccctcaatatgcattcactctggcatgtcc
caggaagagaggctgactcactacaaaagtttcaaggaaggacacaagagaattctggtg
gcgacggacttggtagggagaggcattgacattgagcgtgttaacattgttatcaactac
gacatgccagattctgctgatacatatcttcacagggtcgggagagctggtaggtttgga
acaaagggtcttgcgatcacatttgtggcatcagcttcagactcggaagttcttaatcag
gtgcaagacaggtttgaggtggatataaaggaacttcctgagcagattgatacttccacc
tacatgccgtcttaa
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