Brassica oleracea (wild cabbage): 106313327
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Entry
106313327 CDS
T04124
Name
(RefSeq) cyclic nucleotide-gated ion channel 1-like isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
106313327
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
boe04040
]
106313327
Ion channels [BR:
boe04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
106313327
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
106313327
NCBI-ProteinID:
XP_013606570
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Position
C9:complement(35269510..35272793)
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AA seq
744 aa
AA seq
DB search
MSEFGFCIFLTPSCASTNSPTMNFRPDKSVRFHDWKSDKASDVEYSERTEVPDGLFRRAI
SSISDKLHGCFLRIKMFRRSYSLKETVSKGIDSTHEILDPQGSFLQKWNKIFVLACIVAV
SVDPLFFYVPVLDKAKNCLDVDKKMQTTASVLRSITDIFYAIHMVFQFRTGFIAPSSRVF
GRGVLVENRREIAKRYLSSHFIVDILAVLPLPQMVISIIIPSMREPKTLHTKNMLKFIVF
FQYIPRFMRIYPLYKQVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERKTV
CWKQACERDRRICEIDSLYCREPPTFGDNTFLNASCPVLECNATRFEFGIFLGALQSGVV
ESHDFPLKFFYCFWWGLQNLSSLGQNLKTSTYIWENCFAVFISISGLVLFSFLIGNMQTY
LQSTTTRLEEMRVKRRDAEQWMSHRLLPDNLRKRIRRYEQYKWQETRGVNEENLLSNLPK
DLRRDIKRHLCLALVMRVPMFEQMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFI
MRGKLLTMTTNGGRTGFFNSEHLGAGDFCGEELLTWALDPHTSTNLPISTRTVQALVEVE
AFALKADNLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAFWRRCVKKRLEECLR
QEENRLQDALAKEACGSSPSFGATMYASRFAANILRTIRRSGSVRKPRMLERMPPMLLLQ
KPAEPDFNSDDYMRIVPIYKNRSL
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagttcgggttttgcattttcctcacaccaagttgtgcatcaacaaactctcca
acaatgaattttcgaccagataagtccgttaggtttcacgactggaaatccgacaaggct
tccgacgtggaatactccgagagaaccgaggttccagatggtttattccggagggcaata
agctcaatctcagacaagttacacggatgcttcttaaggatcaaaatgttcaggaggtct
tactctttgaaagaaacggtttcgaaagggattgattccactcacgagatacttgaccca
caaggatctttccttcagaagtggaacaagatcttcgttttagcttgtatcgtcgctgtc
tccgtcgaccctttgttcttctacgtacctgtcctcgacaaggccaagaactgtcttgat
gtcgacaagaaaatgcagacaaccgcaagcgtattgcgctccatcaccgacatcttctac
gccattcacatggttttccagttccgtacgggcttcatcgctccttcttctcgtgtcttt
gggagaggtgttcttgttgagaacaggcgcgagatcgctaaacgttacttgtcctctcat
ttcatcgtcgacattcttgccgtgcttcctcttcctcagatggtgatttcgataatcatt
ccgagtatgagagagcccaagactttgcacacgaagaatatgttgaagttcatagtcttc
ttccaatacataccgaggtttatgagaatctatccgctctataagcaagtgactagaacc
tcaggcatacttacagagacagcttgggcaggagctgcttttaacctcttcctctacatg
cttgctagtcatgtgtttggtgctttctggtatttgttctctatcgagcgcaaaaccgtg
tgctggaagcaagcttgcgagagagacaggaggatctgcgaaatagattcgttgtattgt
agggagcctcccacttttggagacaacacttttctcaatgcgtcttgtccggttctggaa
tgtaacgcaacacgtttcgagtttgggatattccttggcgcacttcagtccggtgtggtg
gagtctcatgatttccctctgaagttcttttactgtttctggtggggtctccaaaacctc
agttcgctgggacaaaaccttaaaacaagtacatacatatgggagaactgtttcgcggtc
ttcatttctatctccggactggttctcttctcgttcttgatcgggaacatgcagacgtat
ctgcaatcaacaaccacaaggctggaggagatgagagtcaagagaagagacgctgaacaa
tggatgtctcaccgtttgctccccgacaatctaaggaaaagaatccgacgatacgagcag
tacaaatggcaagagaccagaggcgttaacgaagagaatctccttagtaacctccctaaa
gatcttagacgcgacattaaacgccatctctgtctcgcccttgtcatgcgtgtccctatg
tttgagcaaatggacgagcagcttcttgatgctctatgtgaccgtctgcaacctgtgctg
tacacagaggaaagctacatcgtcagagaaggagatcctgtagatgaaatgctcttcata
atgcgtgggaagcttctaacaatgacaacaaacggtggaagaaccggtttcttcaactcc
gagcatctcggagctggtgatttctgcggagaggagcttctaacctgggctttagaccca
cacacatccacaaacctcccaatctcgacaagaaccgttcaagctctcgtggaagtcgaa
gccttcgcactcaaagcagacaacctcaaattcgtggcttctcagttcagacgtctccac
agcaaacagctgagacatactttcaggttctactcgcagcaatggaggacttgggctgct
tgcttcatacaagccttttggagaagatgcgtgaagaagagactagaggagtgtcttaga
caagaagagaaccggttgcaggacgctttggctaaagaagcttgtggaagctcaccgagc
tttggtgctacgatgtacgcgtcacggtttgctgcaaacatcttgcggactatacgaagg
agcggttcggtgcgtaaaccgaggatgctggaacgaatgccacctatgctactacttcag
aaaccagctgaaccggatttcaatagtgatgattatatgcgtatagtgccgatatataaa
aatagaagtctttaa
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