KEGG   Brassica oleracea (wild cabbage): 106315696
Entry
106315696         CDS       T04124                                 
Name
(RefSeq) exosome complex component RRP43
  KO
K12586  exosome complex component RRP43
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106315696
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106315696
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     106315696
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PAS X92_N DUF4831
Other DBs
NCBI-GeneID: 106315696
NCBI-ProteinID: XP_013608950
UniProt: A0A0D3E5D6
LinkDB
Position
C9
AA seq 301 aa
MGLPDSSQDLSTEMDVDAYRRLFPLRFFERHLSESLRPDGRPLGKARDTIVNLGLVSSAD
GSALAKIGSTTMLAAIRMEVMSPSTDSPDEGCIAVEFHMPPICSPTVRPGRPADEAPVIS
KRLSDIFSSCDMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLSAVAAFSNLQIP
VVALNDNGRIVAINGEQEENASINEKEAVNKEKRKLTLKNIPFALTCILHKKYILADPTA
EEESIMDTLVTVVLDSSDQIVSFNKSGGNALAGSSAIKSCVELARKRGKELKQILGEMDI
D
NT seq 906 nt   +upstreamnt  +downstreamnt
atgggattaccagattcgtctcaagacttgtcgacagagatggatgtggatgcttacaga
aggctcttccctcttcgtttcttcgagcgccatctctctgagtctctccgacctgatggt
agaccacttggaaaagccagagacaccattgtcaaccttggacttgtttcctccgctgat
ggctctgctcttgccaagattggttctacaactatgcttgctgctataagaatggaagtt
atgagtccttctacagactccccagacgaaggatgcatagctgttgagttccacatgcct
cctatatgctctccaactgttcgtcctggaagaccagctgatgaagctcctgttatctcc
aagcgtttgtctgatattttctcaagctgtgatatgattgaccttaaagaactctgcctt
gttagtggaaaagctgcttggatgggttatctggacatatactgtcttgatgctgatgga
gctcttttcgatgctgctctgctctctgccgttgctgccttttcgaatttgcaaatacca
gttgttgctctgaacgacaacggaagaatagttgccatcaatggagaacaagaggagaat
gcatcgatcaacgagaaggaagcagtgaacaaggagaagagaaagctcacgctcaagaac
atcccttttgctttaacatgcatactccacaagaagtacattctagcagacccaacagct
gaagaagaatcgatcatggacactctggtgactgttgttttggactcttcagatcagatt
gtttctttcaataaatcaggaggaaacgctctcgctggttcatcagccatcaagagctgt
gtggagttagcaaggaagagagggaaggagcttaagcagatactgggtgagatggatatc
gactga

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