KEGG   Brassica oleracea (wild cabbage): 106315762
Entry
106315762         CDS       T04124                                 
Name
(RefSeq) WD repeat-containing protein RUP2
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe04120  Ubiquitin mediated proteolysis
boe04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    106315762
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    106315762
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:boe04121]
    106315762
Enzymes [BR:boe01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106315762
Ubiquitin system [BR:boe04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    106315762
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     106315762
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 Beta-prop_EML_2 WD40_Prp19 WDR55 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C EIF3I Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_NOL10_N Beta-prop_Nup120_160 Beta-prop_SCAP Beta-prop_WDR75_1st WD40_RFWD3 WD40_like
Other DBs
NCBI-GeneID: 106315762
NCBI-ProteinID: XP_013609040
LinkDB
Position
C9:complement(4081154..4082490)
AA seq 386 aa
MGLVFDWSESPETTVILCFHMNTHRTQKQEEEEARHEWDLSLSTVVSSSSSSASDVVGAI
EFDPTDNILATAGISRKIRFYGLTSLLRTTAGVCGGAGGGVNFVDQTNACEYYICTPAKL
SSLRWKPGSCGRVIGSGDYDGVVTEYDLEKRTPVFERDEHGGRRVWSVDYTRHGGAAAVG
ASGSDDGTMQVWDPRCPPEESIGVVRPAGLCRSAVCCVEFDPTGGHAVAVGCADRRGYVY
DMRKLVDPALTLQGHTKTVSYVRFLDGGTVVTAGTDGCLKLWSVEDGRVIRTYEGHVNNR
NFVGLSVWRNGALFGCGSENNRVFVYDRRWRKPVWVDGFEPVGLTSASDKRFVSSVCWRQ
SGVDQCTLVAGGSDGVLQVYVGKRKP
NT seq 1161 nt   +upstreamnt  +downstreamnt
atgggattggttttcgattggtccgaatccccagaaacaacagtcattctctgttttcat
atgaacactcatcgtacgcaaaagcaggaagaagaagaagcaagacacgaatgggatctt
tctctctccaccgtcgtctcttcttcctcctcttctgcctccgacgttgtcggagctata
gagtttgatccgactgataacatcctcgctaccgccggaatctctagaaagattcgtttt
tacgggctcacttctctcttacggaccaccgccggagtctgcggaggagcaggaggagga
gttaacttcgtcgatcaaaccaacgcctgtgaatattacatatgcactccggcgaagctt
agtagtctccggtggaaacccgggtcgtgcggtcgggtcatcgggtcgggtgattacgac
ggcgttgtgacggagtacgatctcgagaagaggacgccggtattcgagcgggacgagcac
ggaggccgccgcgtctggagcgtggattacactcgtcacggtggcgccgccgccgtggga
gcgtcgggatcagacgacggaactatgcaggtgtgggatccgaggtgtccgccggaggaa
tctatcggcgttgtccggccggcgggactttgccggagtgccgtttgctgcgtcgagttt
gatcccaccggtggtcacgcggtggctgtcggatgcgctgatcggagaggttacgtgtac
gatatgaggaaactcgttgacccggcgttgactttacaaggtcataccaaaacggtgtcg
tacgtgaggtttctcgacggtggtacggtggtgacggcgggtacggacggatgtctgaag
ctgtggagcgtggaggacgggcgcgtgattcgcacttacgaggggcatgtgaataaccgg
aacttcgtggggttgtctgtgtggagaaacggcgcgctgtttggttgcggatcggagaac
aacagggtgttcgtgtacgataggaggtggaggaagccggtttgggtagacgggtttgaa
ccggttggtttgacttctgcttcggataagcggttcgtgagtagcgtttgctggaggcaa
tccggtgtggaccagtgtacgctagtggctgggggatctgatggagtgttgcaggtttac
gtgggcaaaagaaagccatag

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