Brassica oleracea (wild cabbage): 106315952
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Entry
106315952 CDS
T04124
Name
(RefSeq) probable 28S rRNA (cytosine-C(5))-methyltransferase
KO
K15264
25S rRNA (cytosine2278-C5)-methyltransferase [EC:
2.1.1.311
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
boe03009
]
106315952
Enzymes [BR:
boe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.311 25S rRNA (cytosine2278-C5)-methyltransferase
106315952
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
Other ribosome biogenesis factors
106315952
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
NSUN5_N
NSUN5_fdxn-like
Methyltransf_25
Ubie_methyltran
Methyltransf_31
FtsJ
Methyltransf_4
PCMT
AcetylCoA_hydro
Motif
Other DBs
NCBI-GeneID:
106315952
NCBI-ProteinID:
XP_013609259
UniProt:
A0A0D3E1A2
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All DBs
Position
C9:complement(3470232..3473149)
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AA seq
485 aa
AA seq
DB search
MARRKSNAPPKATRQPAKQKFSSAERSSLYASREAAKVLGTVLRGDAERRAVASIKSLVF
SPSVRNKRGTFALVCETLKHLTVIKEVLEIANVLNSKWKRQEPLVYIICYDILFGKEPPL
IGDAEKFLMKRKDALVSSLATLLVRKKAETVDELLGVSQLNGPLKPRYVHVNTLKMDVDS
AVQELGKLYKVQKDETVPDLLVMPPVSDLHAHHLVKNGRIFLQGKGSSMVAAALQPEADW
EVIDACAAPGNKTINLAALMKGQGKIIACELNEERVKRLEQTIKLSGATNIEVFHGDFLG
LDPEDPSFAKVRAILLDPSCSGSGTITDRLDHLLPSHSADNNKNYDSIRLHKLAVFQKKA
LAHALSFPQVERVVYSTCSIHQIENEDVVSSVLPLASSLGFELATPFPQWQRRGLPVLAG
SEHLLRMDPEEDKEGFFIALFTKTSKLENSNSSEIPERECRRRRKQGHPFLWPKVFFRAW
NGRMR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtcgcaaatccaacgcgccgccgaaagccacgcgccagcctgccaagcaaaag
ttctccagcgccgagagatcatctctgtacgcatcgagggaagcagctaaggtcctcggc
acagttctccgaggagacgccgagcgtcgagccgtcgcttcgataaagtcactcgtcttc
agcccttccgtccgcaacaaacgcggcaccttcgctctcgtctgcgagaccctcaaacat
cttactgtaataaaagaagttcttgaaatcgctaacgtgttgaatagcaaatggaagaga
caagaaccattggtttacattatttgctatgatatccttttcggaaaggagcctccattg
attggtgatgctgagaagtttctcatgaaacgtaaagatgctctagtgtcaagtctagcc
acgcttctagtgaggaagaaagctgaaactgttgatgagttgttgggtgtttctcagctc
aatggtcctttgaaaccacgttatgttcacgtaaatacactcaagatggatgttgattcg
gcagtgcaggagctggggaagctctataaggtgcagaaggatgagacagttcctgacctg
ttggtgatgccacctgtcagcgatttgcatgctcatcatttggttaagaatgggcgtata
tttttgcagggaaagggaagttcaatggtagcagcagcactacagccagaagcagattgg
gaggttattgatgcatgtgcagctccaggaaacaaaactattaatcttgctgctcttatg
aaaggacaagggaaaatcatagcgtgtgagctgaatgaagaacgtgtaaagcgtttggaa
cagactataaagctctctggtgctaccaatattgaagtctttcatggtgatttcttggga
ctagatcccgaagatccttcgtttgcaaaggttcgggctatattgttggatccttcttgc
tctggctctggaaccatcacagatcgtttggaccatcttctcccttctcattcagcagat
aacaacaagaactatgactccataagactccacaagctcgctgttttccagaagaaggct
cttgctcatgcactctcctttccacaggttgagagagtcgtatacagcacatgctccatc
caccagatagaaaacgaagatgtggtctcatctgttttacctttggcttcatccttgggc
ttcgaactcgctacccctttccctcagtggcagcgtcgtggtctccctgtattagctgga
tctgagcatttactcaggatggatccagaggaggacaaagaagggttcttcatcgctttg
ttcaccaagacaagcaaactcgagaactcgaactcgtctgagattcctgaaagagagtgt
agaagaagacgcaaacagggtcatccgtttctttggcctaaagtgttcttcagagcttgg
aatgggcggatgaggtag
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